Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.1e-63 246.5 124 100.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 5.7e-57 224.2 123 91.9
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 8.2e-56 220.3 119 91.6
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.8e-55 219.2 124 85.5
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 4.1e-55 218.0 124 87.1
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 5.3e-55 217.6 124 83.9
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 6.9e-55 217.2 124 85.5
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.2e-54 216.5 123 85.4
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.2e-54 216.5 123 85.4
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 2.6e-54 215.3 124 84.7
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 3.4e-54 214.9 124 84.7
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 3.4e-54 214.9 119 86.6
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 3.4e-54 214.9 124 85.5
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 4.5e-54 214.5 122 86.9
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 4.5e-54 214.5 122 85.2
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.0e-53 213.4 124 84.7
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.0e-53 213.4 124 82.3
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.3e-53 213.0 122 85.2
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.2e-53 212.2 121 87.6
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.9e-53 211.8 121 86.8
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.9e-53 211.8 121 87.6
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.8e-53 211.5 122 82.0
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 3.8e-53 211.5 124 83.1
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 5.0e-53 211.1 124 81.5
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 5.0e-53 211.1 124 82.3
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 5.0e-53 211.1 124 82.3
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.5e-53 210.7 124 82.3
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.5e-53 210.7 119 88.2
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 8.4e-53 210.3 122 80.3
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 1.1e-52 209.9 121 83.5
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.1e-52 209.9 124 82.3
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 1.1e-52 209.9 124 81.5
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.4e-52 209.5 124 81.5
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.4e-52 209.5 124 82.3
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 1.9e-52 209.1 121 84.3
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.9e-52 209.1 124 81.5
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.9e-52 209.1 122 82.0
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.9e-52 209.1 124 81.5
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 2.5e-52 208.8 124 83.9
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 80.3
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 80.3
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 83.6
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 82.8
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 3.2e-52 208.4 124 83.1
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.2e-52 208.4 119 87.4
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 4.2e-52 208.0 118 85.6
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 5.5e-52 207.6 124 83.9
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 5.5e-52 207.6 124 83.1
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 5.5e-52 207.6 119 84.0
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 5.5e-52 207.6 124 81.5
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 7.2e-52 207.2 119 84.0
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 7.2e-52 207.2 121 84.3
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 9.3e-52 206.8 122 81.1
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.2e-51 206.5 121 81.8
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 3.5e-51 204.9 119 82.4
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 4.6e-51 204.5 124 79.8
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.1e-51 204.1 124 80.6
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 6.1e-51 204.1 124 80.6
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 6.1e-51 204.1 121 82.6
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 7.9e-51 203.8 124 82.3
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.9e-51 203.8 124 82.3
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 7.9e-51 203.8 154 70.8
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.0e-50 203.4 119 84.9
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 82.4
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.8e-50 202.6 124 83.1
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 2.3e-50 202.2 122 80.3
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 3.0e-50 201.8 110 90.0
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 3.0e-50 201.8 122 80.3
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 3.9e-50 201.4 124 81.5
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 6.7e-50 200.7 124 79.0
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 6.7e-50 200.7 124 79.8
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 79.5
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 8.7e-50 200.3 123 76.4
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.9e-49 199.1 119 81.5
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.9e-49 199.1 123 74.0
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.9e-49 199.1 122 81.1
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 2.5e-49 198.7 118 79.7
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 2.5e-49 198.7 121 78.5
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 2.5e-49 198.7 119 80.7
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 4.3e-49 198.0 121 84.3
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 4.3e-49 198.0 118 79.7
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 5.7e-49 197.6 118 81.4
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 7.4e-49 197.2 121 78.5
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.7e-49 196.8 108 89.8
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 1.3e-48 196.4 119 80.7
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.3e-48 196.4 124 77.4
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-48 196.4 124 80.6
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-48 196.4 119 80.7
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.6e-48 196.1 124 77.4
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.7e-48 194.9 119 78.2
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.7e-48 194.9 119 78.2
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.4e-47 193.0 124 76.6
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.4e-47 193.0 124 77.4
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.3e-47 191.0 129 70.5
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 6.9e-47 190.7 124 78.2
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.6e-46 188.7 119 75.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 7.7e-46 187.2 119 73.9
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.0e-45 186.8 121 78.5
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.0e-45 186.8 124 75.0
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.3e-45 186.4 121 78.5
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.2e-45 185.7 124 75.0
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 2.9e-45 185.3 121 79.3
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.8e-45 184.9 119 72.3
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 5.0e-45 184.5 119 77.3
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 5.5e-44 181.0 122 68.0
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.2e-43 179.9 118 73.7
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 8.8e-42 173.7 119 69.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 3.3e-41 171.8 119 68.9
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 4.3e-41 171.4 124 67.7
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 7.4e-41 170.6 122 73.0
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-40 169.9 105 78.1
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.2e-40 169.1 124 70.2
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 2.2e-40 169.1 119 73.9
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.7e-40 168.3 118 68.6
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 8.2e-40 167.2 124 70.2
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.5e-38 162.9 118 67.8
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 2.0e-38 162.5 124 65.3
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 4.5e-38 161.4 106 77.4
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 5.9e-38 161.0 119 65.5
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.3e-37 159.8 97 79.4
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 1.7e-37 159.5 124 64.5
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 2.5e-36 155.6 110 69.1
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.6e-35 152.9 121 58.7
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.0e-34 148.7 83 84.3
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 6.7e-34 147.5 118 66.9
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 4.2e-28 128.3 119 59.7
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.6e-27 126.3 82 74.4
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 3.0e-26 122.1 118 55.9
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 4.0e-26 121.7 81 77.8
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 5.2e-26 121.3 124 58.9
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.7e-24 116.3 61 91.8
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.7e-24 116.3 91 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 6.3e-24 114.4 119 48.7
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.4e-23 113.2 100 62.0
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 4.1e-23 111.7 123 52.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 9.1e-23 110.5 60 86.7
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 2.0e-22 109.4 68 75.0
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.7e-22 107.5 93 59.1
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.9e-20 102.8 83 63.9
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 2.1e-19 99.4 85 64.7
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 3.7e-16 88.6 63 69.8
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 1.5e-12 76.6 104 48.1
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 2.3e-10 69.3 43 74.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.2e-09 67.0 109 37.6
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.5e-09 66.6 39 74.4
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 9.8e-09 63.9 91 39.6
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 3.5e-06 55.5 110 33.6


User provided reference genes

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