Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1802.7 1198 100.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 0.0e+00 1461.8 892 86.8
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 0.0e+00 1146.7 896 69.2
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 0.0e+00 1124.0 894 68.0
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 0.0e+00 1117.4 960 64.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 2.3e-235 820.1 890 51.6
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 4.7e-233 812.4 891 51.4
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.8e-232 810.4 900 51.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.1e-229 801.2 892 50.3
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.4e-229 800.8 889 50.7
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.7e-228 796.6 889 50.8
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.0e-227 794.7 892 50.8
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 4.3e-226 789.3 889 50.1
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 3.0e-224 783.1 906 50.0
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 4.0e-224 782.7 891 50.4
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 9.8e-223 778.1 894 48.5
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.3e-222 777.7 921 50.2
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 3.7e-222 776.2 892 49.0
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 8.3e-222 775.0 889 49.4
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.2e-217 758.8 895 49.8
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 3.4e-215 753.1 901 48.5
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.1e-213 748.0 933 46.6
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 3.2e-213 746.5 907 48.5
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.5e-212 743.0 889 47.5
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 7.8e-212 741.9 895 47.4
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.7e-211 740.7 892 46.0
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 2.5e-210 736.9 906 49.0
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 9.5e-210 734.9 892 46.9
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.2e-209 732.3 915 48.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.8e-208 730.7 894 47.2
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 6.4e-206 722.2 862 48.1
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 3.2e-205 719.9 896 46.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 5.1e-203 712.6 894 46.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 6.6e-203 712.2 891 47.8
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.8e-201 706.8 898 46.9
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 6.8e-200 702.2 898 47.6
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 2.6e-199 700.3 893 45.6
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.4e-199 699.9 891 46.2
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 9.9e-199 698.4 892 45.7
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 8.4e-198 695.3 899 46.9
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.5e-194 683.7 960 45.3
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 9.6e-194 681.8 889 44.4
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 3.6e-193 679.9 906 44.5
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 4.0e-192 676.4 941 45.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.1e-188 664.1 910 44.8
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 4.6e-188 662.9 890 43.4
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 6.0e-188 662.5 766 49.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.3e-186 656.8 890 44.5
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.6e-185 653.3 895 43.2
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 1.2e-183 648.3 867 44.6
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 1.5e-183 647.9 896 45.1
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 3.4e-183 646.7 902 44.3
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.4e-181 640.6 896 44.9
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.6e-180 637.9 897 42.9
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 3.0e-179 633.6 897 42.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 5.8e-175 619.4 896 42.4
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.7e-174 617.8 896 41.2
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 2.9e-174 617.1 894 42.4
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 3.8e-174 616.7 894 42.3
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.1e-173 615.1 796 46.2
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 1.6e-172 611.3 894 42.3
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 2.1e-172 610.9 894 42.1
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 2.7e-172 610.5 891 41.4
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 6.0e-172 609.4 901 41.6
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 3.3e-170 603.6 897 41.2
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.7e-169 600.1 892 41.7
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.7e-169 600.1 901 41.1
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.8e-168 597.8 901 41.2
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 1.8e-168 597.8 900 42.0
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.8e-168 597.8 898 41.1
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.5e-167 594.7 900 40.8
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.0e-167 594.3 890 41.7
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.2e-164 585.1 895 39.9
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.1e-162 578.6 897 39.9
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 2.5e-162 577.4 897 39.5
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.1e-160 572.0 904 39.5
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.0e-159 567.8 882 40.0
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.8e-158 563.5 911 38.7
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 5.0e-158 563.1 919 38.1
QL93p0356_0058 Quercus lobata HOM05D002270 ORTHO05D002866 3.2e-157 560.5 304 92.8
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 9.4e-157 558.9 918 38.7
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 2.7e-156 557.4 959 38.0
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.6e-156 557.0 894 38.4
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 7.4e-154 549.3 893 40.1
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 2.4e-152 544.3 1033 35.8
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 1.7e-150 538.1 680 46.6
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.1e-148 529.6 816 39.7
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 2.2e-145 521.2 686 45.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 4.7e-140 503.4 901 37.1
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.3e-134 485.3 909 35.5
QL03p018747 Quercus lobata HOM05D002270 ORTHO05D002866 9.7e-130 469.2 264 93.2
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.4e-128 464.5 486 54.3
Nitab4.5_0003025g0020 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.0e-127 461.5 749 39.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.3e-118 432.2 850 35.8
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.3e-118 431.4 908 35.2
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 3.2e-112 411.0 773 35.2
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 7.0e-112 409.8 901 33.4
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.5e-109 399.4 742 35.6
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 3.2e-104 384.4 589 41.1
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 2.3e-102 378.3 662 36.7
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.4e-96 359.0 483 45.1
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 7.8e-95 353.2 507 43.0
VMungo0464G1105 Vigna mungo HOM05D002270 ORTHO05D002866 4.0e-91 340.9 456 45.2
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 1.2e-90 339.3 684 35.4
C05p38590 Brassica napus HOM05D002270 ORTHO05D002866 9.2e-88 329.7 687 33.8
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 9.6e-85 319.7 750 32.9
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.2e-81 308.5 371 47.7
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.6e-78 297.0 689 33.4
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 3.4e-74 284.6 690 32.8
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 6.6e-70 270.4 302 47.7
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 8.7e-70 270.0 425 41.4
CDE12G0087 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.2e-58 233.0 563 31.1
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 5.5e-56 224.2 927 25.9
ECA067G0001 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.5e-53 216.1 551 31.2
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 6.9e-51 207.2 937 24.5
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.7e-47 195.3 936 24.7
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 8.2e-44 183.7 214 46.7
CBR_g741 Chara braunii HOM05D002270 ORTHO05D002866 3.6e-39 168.3 839 23.2
Aqoxy6G02935 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 1.9e-32 146.0 239 39.3
BolC5t32597H Brassica oleracea HOM05D002270 ORTHO05D002866 3.2e-32 145.2 204 41.7
Psat1g148840 Pisum sativum HOM05D002270 ORTHO05D012184 9.4e-32 143.7 180 43.9
COL.COLO4_12566 Corchorus olitorius HOM05D002270 ORTHO05D002866 4.7e-31 141.4 149 51.7
SHI16817 Sapria himalayana HOM05D002270 ORTHO05D002866 1.8e-30 139.4 196 42.3
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.6e-26 125.6 160 43.1
Cpa.g.sc30.8 Carica papaya HOM05D002270 ORTHO05D002866 1.1e-24 120.2 118 55.1
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 3.6e-23 115.2 125 50.4
VMungo0366G0001 Vigna mungo HOM05D002270 ORTHO05D002866 6.1e-23 114.4 246 32.9
QL01p054500 Quercus lobata HOM05D002270 ORTHO05D002866 1.0e-22 113.6 61 96.7
COL.COLO4_12567 Corchorus olitorius HOM05D002270 ORTHO05D044752 3.7e-20 105.1 145 41.4
QL07p000400 Quercus lobata HOM05D000232 ORTHO05D000145 6.3e-20 104.4 52 98.1
Lsat_1_v5_gn_9_82220 Lactuca sativa HOM05D002270 ORTHO05D002866 1.0e-17 97.1 166 39.2
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 1.3e-17 96.7 100 52.0
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 3.6e-15 88.6 255 27.5
Lsat_1_v5_gn_4_95801 Lactuca sativa HOM05D000640 ORTHO05D229177 1.5e-13 83.2 71 53.5
Lsat_1_v5_gn_8_57560 Lactuca sativa HOM05D002270 ORTHO05D044752 4.4e-13 81.6 135 35.6
COL.COLO4_30772 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.3e-12 80.1 154 37.0
COL.COLO4_26664 Corchorus olitorius HOM05D002270 ORTHO05D011956 2.2e-12 79.3 74 56.8
RcHm_v2.0_Chr3g0467481 Rosa chinensis HOM05D002270 ORTHO05D346899 5.5e-08 64.7 49 63.3
HanXRQChr14g0434531 Helianthus annuus HOM05D002270 ORTHO05D002866 9.4e-08 63.9 57 49.1
HanXRQChr16g0507711 Helianthus annuus HOM05D002270 ORTHO05D002866 1.6e-07 63.2 57 49.1
TPR.G20824 Trifolium pratense HOM05D002270 ORTHO05D002866 4.7e-07 61.6 52 59.6
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-06 59.3 88 37.5


User provided reference genes

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