Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p054500 Quercus lobata HOM05D002270 ORTHO05D002866 2.2e-64 248.8 128 100.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.0e-32 143.7 75 97.3
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 2.0e-25 119.4 74 81.1
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 3.8e-24 115.2 73 80.8
QL01p054541 Quercus lobata HOM05D002270 ORTHO05D002866 8.5e-24 114.0 61 96.7
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 4.2e-23 111.7 73 78.1
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 4.0e-21 105.1 81 66.7
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 6.7e-21 104.4 74 68.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 1.1e-20 103.6 75 70.7
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 4.4e-20 101.7 75 65.3
TAR636G2809 Trochodendron aralioides HOM05D002270 ORTHO05D002866 4.8e-19 98.2 75 66.7
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 6.3e-19 97.8 72 66.7
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 8.2e-19 97.4 72 68.1
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.1e-18 97.1 74 67.6
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 1.6e-17 93.2 75 62.7
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.6e-17 92.4 75 61.3
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 2.6e-17 92.4 79 59.5
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 4.5e-17 91.7 75 60.0
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 4.5e-17 91.7 75 60.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 2.9e-16 89.0 75 58.7
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 5.0e-16 88.2 70 64.3
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 5.0e-16 88.2 74 58.1
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 8.5e-16 87.4 74 58.1
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.1e-15 87.0 75 57.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.9e-15 86.3 70 61.4
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 2.5e-15 85.9 70 61.4
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.5e-15 85.9 75 56.0
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.5e-15 85.9 75 56.0
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.2e-15 85.5 69 62.3
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 3.2e-15 85.5 69 62.3
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 4.2e-15 85.1 68 63.2
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 5.5e-15 84.7 70 58.6
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 5.5e-15 84.7 75 54.7
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 9.4e-15 84.0 70 62.9
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 9.4e-15 84.0 84 47.6
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.6e-14 83.2 70 57.1
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.6e-14 83.2 74 55.4
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.1e-14 82.8 70 55.7
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 2.1e-14 82.8 74 55.4
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.1e-14 82.8 74 55.4
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 2.7e-14 82.4 76 55.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 4.7e-14 81.6 96 49.0
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 6.1e-14 81.3 74 52.7
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 8.0e-14 80.9 74 55.4
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 1.0e-13 80.5 70 60.0
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.0e-13 80.5 73 47.9
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 1.4e-13 80.1 70 51.4
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.4e-13 80.1 70 55.7
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.4e-13 80.1 73 52.1
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.4e-13 80.1 70 52.9
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.8e-13 79.7 73 49.3
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 2.3e-13 79.3 89 43.8
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 3.0e-13 79.0 73 46.6
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 3.0e-13 79.0 74 54.1
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 5.2e-13 78.2 72 56.9
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 5.2e-13 78.2 72 56.9
Aqoxy6G02935 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 6.8e-13 77.8 84 51.2
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 6.8e-13 77.8 82 48.8
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 6.8e-13 77.8 71 52.1
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 8.8e-13 77.4 74 52.7
Ah.08g216550 Amaranthus hybridus HOM05D002270 ORTHO05D002866 1.2e-12 77.0 70 52.9
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 1.2e-12 77.0 74 50.0
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.5e-12 76.6 70 54.3
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.5e-12 76.6 69 49.3
vmacro22216 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.5e-12 76.6 74 54.1
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 2.0e-12 76.3 89 42.7
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 2.6e-12 75.9 71 49.3
SHI16817 Sapria himalayana HOM05D002270 ORTHO05D002866 3.4e-12 75.5 69 56.5
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.4e-12 75.5 85 47.1
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 4.4e-12 75.1 89 43.8
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 5.7e-12 74.7 65 55.4
ECA067G0001 Erigeron canadensis HOM05D002270 ORTHO05D002866 7.5e-12 74.3 70 54.3
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 7.5e-12 74.3 89 43.8
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.8e-12 73.9 78 47.4
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 9.8e-12 73.9 72 54.2
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.3e-11 73.6 111 45.9
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 1.3e-11 73.6 65 53.8
VMungo0464G0658 Vigna mungo HOM05D002270 ORTHO05D002866 1.3e-11 73.6 71 49.3
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.7e-11 73.2 73 46.6
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.7e-11 73.2 73 49.3
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 1.7e-11 73.2 72 52.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 4.8e-11 71.6 88 48.9
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 1.1e-10 70.5 69 52.2
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 1.8e-10 69.7 65 52.3
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 2.4e-10 69.3 74 52.7
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 5.4e-10 68.2 73 42.5
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 5.4e-10 68.2 73 42.5
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 5.4e-10 68.2 73 42.5
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.4e-10 68.2 73 42.5
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 9.1e-10 67.4 71 47.9
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 9.1e-10 67.4 71 47.9
SEGI_22741 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 5.9e-09 64.7 68 50.0
BcaNung06980 Brassica carinata HOM05D002270 ORTHO05D002866 1.0e-08 63.9 74 40.5
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.3e-08 63.5 88 45.5
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.7e-08 63.2 88 44.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.2e-08 62.8 88 45.5
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.8e-08 62.0 88 44.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 8.5e-08 60.8 54 55.6
SEGI_33198 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 8.5e-08 60.8 67 47.8
Cpa.g.sc30.6 Carica papaya HOM05D002270 ORTHO05D002866 9.4e-07 57.4 45 60.0
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 1.6e-06 56.6 68 45.6
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 6.1e-06 54.7 75 46.7


User provided reference genes

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