Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 2.0e-92 342.4 176 100.0
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 1.5e-82 309.7 176 89.8
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 3.3e-79 298.5 176 85.8
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 5.7e-79 297.7 178 87.1
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 8.2e-78 293.9 175 87.4
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 1.4e-77 293.1 178 84.8
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 7.0e-77 290.8 176 85.2
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.2e-76 290.0 176 84.1
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 1.2e-76 290.0 176 84.1
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 1.2e-76 290.0 174 84.5
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.7e-75 286.2 175 81.7
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.2e-75 285.8 175 81.7
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 6.5e-75 284.3 178 83.1
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 6.5e-75 284.3 166 86.7
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.1e-74 283.5 178 82.6
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 1.2e-73 280.0 182 81.3
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 1.2e-73 280.0 178 80.3
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 1.6e-73 279.6 178 82.0
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 2.1e-73 279.3 176 81.2
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 4.7e-73 278.1 178 80.3
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 4.0e-72 275.0 177 78.0
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 1.2e-71 273.5 178 79.8
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.5e-71 273.1 179 79.3
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 2.6e-71 272.3 178 79.8
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 3.7e-70 268.5 179 76.0
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 6.3e-70 267.7 178 77.5
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 1.1e-69 266.9 177 75.7
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.8e-69 266.2 178 75.8
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.8e-69 266.2 178 77.5
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 3.1e-69 265.4 180 78.3
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 7.0e-69 264.2 176 78.4
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 9.1e-69 263.8 178 75.3
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 9.1e-69 263.8 178 77.0
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.2e-68 263.5 178 74.7
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.6e-68 263.1 178 78.1
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.6e-68 263.1 164 82.3
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.6e-68 263.1 166 80.7
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 3.5e-68 261.9 178 74.7
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 3.5e-68 261.9 178 77.0
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 4.5e-68 261.5 181 78.5
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 5.9e-68 261.2 178 74.2
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 5.9e-68 261.2 176 76.1
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 5.9e-68 261.2 176 76.1
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 7.7e-68 260.8 176 76.7
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 3.8e-67 258.5 176 75.6
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.0e-67 258.1 178 74.7
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 6.5e-67 257.7 176 74.4
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 1.9e-66 256.1 166 77.7
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 2.5e-66 255.8 177 75.7
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.5e-66 255.8 176 75.6
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 9.5e-66 253.8 169 79.9
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 9.5e-66 253.8 178 73.0
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 2.8e-65 252.3 178 75.8
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 6.1e-65 251.1 178 73.0
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.8e-64 249.6 178 72.5
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.0e-64 248.4 178 72.5
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 1.2e-63 246.9 163 78.5
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 1.2e-63 246.9 177 72.9
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 1.5e-63 246.5 174 74.7
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 2.6e-63 245.7 179 72.6
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 3.4e-63 245.4 176 73.9
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 5.7e-63 244.6 180 72.8
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 7.5e-63 244.2 179 71.5
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 3.7e-62 241.9 173 72.8
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.7e-62 241.9 147 82.3
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.7e-62 241.9 176 72.7
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.7e-62 241.9 176 72.7
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 6.3e-62 241.1 177 73.4
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 1.8e-61 239.6 178 73.6
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.4e-61 239.2 176 72.2
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 2.4e-61 239.2 180 68.9
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 3.1e-61 238.8 207 65.7
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.4e-61 238.0 176 71.0
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 1.6e-60 236.5 181 73.5
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 2.7e-60 235.7 236 58.9
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 2.3e-59 232.6 164 75.0
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 2.9e-59 232.3 172 70.3
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 3.8e-59 231.9 172 70.9
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 5.0e-59 231.5 172 70.3
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 8.6e-59 230.7 167 71.3
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 8.6e-59 230.7 176 71.0
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 4.3e-58 228.4 159 69.8
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 5.6e-58 228.0 165 70.3
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.2e-57 226.9 135 84.4
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 2.1e-57 226.1 166 71.1
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 4.7e-57 224.9 159 75.5
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 8.9e-56 220.7 137 80.3
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.2e-55 220.3 177 67.8
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 2.6e-55 219.2 137 80.3
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 7.5e-55 217.6 165 70.9
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 2.2e-54 216.1 138 81.9
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 8.3e-54 214.2 134 81.3
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.4e-53 212.6 165 68.5
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 2.0e-52 209.5 178 63.5
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.7e-52 209.1 176 65.3
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 4.6e-52 208.4 183 63.9
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 5.9e-52 208.0 169 68.0
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 7.8e-52 207.6 163 69.3
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 1.0e-51 207.2 137 79.6
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 2.5e-50 202.6 131 79.4
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 8.0e-49 197.6 159 66.7
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 8.0e-49 197.6 159 66.7
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 1.4e-48 196.8 160 66.9
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.4e-48 196.8 159 66.7
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.4e-48 196.8 159 66.7
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 3.1e-48 195.7 166 65.1
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-46 189.9 114 83.3
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 2.9e-46 189.1 107 85.0
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.7e-46 188.7 176 61.9
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 5.4e-45 184.9 124 73.4
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 7.0e-45 184.5 160 64.4
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.9e-42 176.4 176 59.7
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 7.3e-42 174.5 177 55.9
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 4.7e-41 171.8 143 63.6
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 4.9e-38 161.8 165 54.5
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 6.4e-38 161.4 175 52.6
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 4.1e-37 158.7 174 53.4
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 7.6e-31 137.9 113 63.7
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 2.2e-30 136.3 143 53.1
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.5e-26 123.6 99 63.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.3e-26 122.5 121 57.9
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 3.6e-25 119.0 135 48.9
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 4.7e-25 118.6 159 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.1e-24 117.5 104 56.7
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 1.2e-23 114.0 80 72.5
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.5e-23 113.6 72 83.3
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.6e-20 103.6 85 62.4
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-19 100.1 82 65.9
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-18 95.9 137 43.8
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.6e-12 77.0 60 70.0
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 3.5e-12 75.9 178 32.0
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 8.1e-09 64.7 43 81.4
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.8e-08 63.5 120 39.2
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 1.2e-07 60.8 35 77.1


User provided reference genes

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