Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.2e-145 518.8 248 100.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.7e-108 395.2 225 81.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 8.2e-108 394.0 231 79.7
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.3e-100 370.2 225 77.3
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.2e-90 337.0 229 70.3
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.7e-90 335.9 220 72.7
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.9e-90 334.7 226 69.9
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 7.8e-90 334.3 232 67.2
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 2.3e-89 332.8 220 69.5
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.9e-89 332.4 228 68.0
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 3.8e-89 332.0 231 66.7
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.0e-89 331.6 234 66.7
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 5.0e-89 331.6 234 67.9
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 6.6e-89 331.3 225 68.0
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 6.6e-89 331.3 228 68.4
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.5e-88 330.1 228 67.1
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 3.3e-88 328.9 228 66.7
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.6e-88 328.2 225 68.9
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 9.5e-88 327.4 225 70.7
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 9.5e-88 327.4 225 70.2
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.2e-87 327.0 225 68.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-87 327.0 222 68.0
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.8e-87 325.9 226 68.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.7e-87 325.1 230 66.5
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 4.7e-87 325.1 233 64.4
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 8.0e-87 324.3 224 68.8
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 1.4e-86 323.6 219 68.5
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.8e-86 323.2 225 67.1
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.8e-86 323.2 225 68.4
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.8e-86 323.2 219 69.4
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 8.9e-86 320.9 226 69.9
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 3.4e-85 318.9 230 64.8
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 4.4e-85 318.5 225 67.1
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 4.4e-85 318.5 226 68.1
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 4.4e-85 318.5 232 63.8
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.8e-85 318.2 229 67.7
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.5e-85 317.8 229 67.2
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 9.8e-85 317.4 234 64.5
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-84 316.6 229 67.7
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-84 316.6 229 67.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.2e-84 316.2 220 66.8
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 2.9e-84 315.8 234 64.5
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 8.3e-84 314.3 225 67.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.4e-83 313.5 220 65.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.4e-83 313.5 225 66.7
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 7.0e-83 311.2 226 64.6
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.6e-82 310.1 226 64.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-82 308.1 226 64.6
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 7.8e-82 307.8 229 64.2
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 5.0e-81 305.1 220 65.9
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.1e-80 303.9 224 62.9
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.3e-80 302.4 225 65.3
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-79 300.4 228 61.4
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-79 299.3 228 62.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 6.2e-79 298.1 226 61.9
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 6.2e-79 298.1 226 61.5
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.2e-78 295.0 226 62.4
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 5.2e-78 295.0 225 62.2
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 4.4e-77 292.0 228 61.8
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-76 290.4 194 69.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.2e-76 289.7 227 61.7
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-76 289.7 225 61.3
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.4e-75 287.0 225 63.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-75 287.0 225 61.8
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 5.4e-75 285.0 223 59.2
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 9.2e-75 284.3 226 63.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 5.1e-73 278.5 230 57.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 6.6e-73 278.1 223 57.8
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.5e-72 276.2 227 58.1
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.3e-72 275.4 210 60.5
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 5.6e-72 275.0 220 60.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.2e-71 273.9 211 63.0
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.6e-71 272.3 221 58.4
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.2e-71 271.6 216 62.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.3e-70 269.6 204 60.3
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 3.1e-70 269.2 219 59.4
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 6.8e-70 268.1 225 57.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.2e-69 267.3 229 55.5
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.0e-69 266.5 225 56.4
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.6e-69 266.2 228 56.1
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 7.5e-69 264.6 225 56.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.1e-67 260.8 228 54.8
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 1.4e-67 260.4 228 55.3
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.9e-67 260.0 228 54.8
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 4.1e-67 258.8 222 57.2
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 1.2e-66 257.3 228 54.8
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.2e-66 257.3 225 54.7
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.0e-65 252.7 228 53.1
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.1e-65 251.9 229 53.3
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-64 250.4 224 54.9
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 9.5e-64 247.7 227 55.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.6e-63 246.9 230 55.2
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 4.0e-62 242.3 229 52.0
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 5.2e-62 241.9 230 54.3
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.8e-62 241.5 228 51.8
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.7e-60 236.9 247 47.4
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.1e-59 234.2 217 57.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.3e-57 227.3 236 48.7
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.9e-57 225.7 219 52.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.9e-56 223.4 236 50.0
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.0e-54 215.7 222 50.9
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 6.4e-52 208.4 141 70.9
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 2.7e-50 203.0 228 46.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.1e-48 197.6 225 44.0
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.3e-48 196.1 248 43.1
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.3e-48 195.7 266 41.4
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.6e-48 195.3 245 42.9
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 3.1e-46 189.5 248 41.1
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.4e-45 186.0 223 45.3
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.9e-45 184.5 221 48.0
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-44 184.1 225 43.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 3.8e-44 182.6 264 38.6
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 3.8e-44 182.6 237 41.4
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 3.8e-44 182.6 150 56.0
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-44 182.2 226 42.5
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.4e-43 179.9 227 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 7.1e-43 178.3 222 42.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.6e-42 177.2 233 41.2
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.9e-42 174.9 229 41.5
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.8e-41 173.7 174 49.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.8e-41 173.7 174 49.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 2.3e-41 173.3 256 37.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.0e-41 172.9 230 42.2
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 5.1e-41 172.2 259 36.7
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.5e-40 170.6 260 37.3
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.4e-40 168.3 260 37.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-38 164.1 227 44.5
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.1e-38 162.9 227 44.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 4.0e-38 162.5 234 39.7
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.7e-36 157.1 215 41.4
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.7e-36 157.1 225 38.7
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.5e-35 153.3 252 36.5
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 5.5e-35 152.1 180 43.9
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 1.6e-34 150.6 354 29.4
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.0e-33 147.9 159 45.3
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.7e-33 144.8 245 36.3
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 5.6e-32 142.1 172 44.8
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.3e-31 141.0 204 37.3
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 2.1e-31 140.2 140 49.3
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 4.8e-31 139.0 228 35.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-30 137.9 223 38.6
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.1e-30 137.9 312 31.7
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.1e-30 137.9 217 36.9
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.8e-30 137.1 225 36.4
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-30 136.0 318 31.4
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 4.0e-30 136.0 160 44.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 5.3e-30 135.6 143 44.8
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.4e-29 132.9 323 31.0
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 3.2e-27 126.3 114 52.6
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.6e-26 124.0 142 47.2
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.9e-26 121.7 225 31.6
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 3.9e-25 119.4 105 53.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 4.8e-23 112.5 155 40.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 2.0e-21 107.1 160 35.6
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.6e-21 106.7 160 35.6
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.4e-17 94.4 115 39.1
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.3e-17 93.6 211 34.1
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-16 91.3 75 56.0
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-15 87.4 160 35.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.1e-14 83.2 162 29.0
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.5e-13 79.3 170 31.2
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 7.7e-13 78.6 260 27.3
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.3e-12 77.8 94 37.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.6e-10 69.7 68 48.5


User provided reference genes

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