Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.3e-301 1038.1 531 100.0
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 2.3e-288 995.0 531 96.8
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 4.3e-239 831.2 516 84.3
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 2.5e-223 778.9 516 78.5
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 7.4e-223 777.3 518 77.6
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.1e-221 773.5 515 76.5
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 3.1e-221 771.9 516 76.7
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 1.2e-220 770.0 515 77.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 2.5e-218 762.3 515 77.1
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 4.2e-218 761.5 515 75.5
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.2e-217 760.0 524 75.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.6e-217 758.4 515 75.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 1.8e-216 756.1 515 75.1
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.3e-216 755.7 513 75.2
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 6.7e-216 754.2 512 77.3
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 6.3e-214 747.7 518 74.9
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 8.2e-214 747.3 516 75.4
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 3.1e-213 745.3 517 74.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 2.2e-211 739.2 531 74.0
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 9.4e-210 733.8 515 73.8
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 6.7e-208 727.6 516 73.4
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 8.8e-208 727.2 517 72.9
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 5.7e-207 724.5 517 72.7
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 6.3e-206 721.1 518 72.8
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 8.2e-206 720.7 517 72.3
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 2.0e-204 716.1 515 72.4
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.3e-203 713.4 513 72.5
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 3.8e-203 711.8 516 72.9
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 2.5e-202 709.1 518 71.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 4.2e-202 708.4 517 71.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 6.1e-201 704.5 512 71.5
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 1.8e-200 703.0 517 70.6
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 5.2e-200 701.4 519 69.9
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 6.8e-200 701.0 519 69.9
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.5e-199 699.9 518 70.1
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 2.6e-199 699.1 512 70.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 3.4e-199 698.7 517 69.8
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 3.4e-199 698.7 521 69.7
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 7.5e-199 697.6 518 70.3
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 2.2e-198 696.0 515 69.9
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 4.8e-198 694.9 514 71.0
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 4.8e-198 694.9 514 69.1
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 6.3e-198 694.5 518 69.9
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 1.8e-197 693.0 516 70.0
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.2e-196 690.3 515 70.5
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 2.0e-196 689.5 515 70.1
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 2.7e-196 689.1 517 70.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 3.6e-193 678.7 516 68.6
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 3.6e-193 678.7 516 68.4
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 6.1e-193 677.9 516 67.6
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 1.0e-192 677.2 516 68.2
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 6.8e-192 674.5 515 69.3
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 6.8e-192 674.5 514 67.7
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.8e-192 674.1 479 72.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 4.9e-190 668.3 512 66.8
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 8.3e-190 667.5 511 66.7
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 3.1e-189 665.6 515 67.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.2e-188 663.7 517 66.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 1.6e-188 663.3 514 67.7
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 2.3e-184 649.4 514 66.0
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 6.8e-184 647.9 512 68.0
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 9.8e-183 644.0 514 64.2
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 2.2e-182 642.9 517 66.5
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.2e-181 639.0 539 62.3
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.2e-181 639.0 539 62.3
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.5e-180 635.6 516 66.7
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 5.0e-179 631.7 516 66.3
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 8.6e-179 630.9 570 62.1
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 8.0e-177 624.4 515 64.9
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 8.9e-176 620.9 517 63.1
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.4e-173 613.6 514 64.2
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 6.0e-172 608.2 517 60.7
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 1.6e-169 600.1 517 62.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 4.1e-165 585.5 464 66.4
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 8.9e-160 567.8 516 61.4
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 8.9e-160 567.8 422 69.9
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 5.4e-157 558.5 426 69.0
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 3.9e-155 552.4 514 57.2
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 3.3e-146 522.7 311 88.4
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 2.8e-145 519.6 409 67.2
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 3.1e-144 516.2 408 67.4
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.6e-143 513.1 514 54.7
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 6.6e-139 498.4 448 63.6
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.6e-137 492.7 335 76.7
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.1e-136 491.1 425 64.0
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 8.7e-123 444.9 545 45.3
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 1.1e-120 438.0 362 61.0
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.8e-120 437.2 516 52.9
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.7e-118 430.6 353 65.7
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 9.7e-106 388.3 290 70.3
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.1e-92 344.0 308 61.0
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 2.5e-85 320.5 298 60.4
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.3e-78 298.1 188 79.8
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 1.7e-78 297.7 179 83.2
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 1.2e-76 291.6 178 82.6
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.0e-75 288.5 214 68.7
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 3.4e-74 283.5 256 62.5
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 9.5e-69 265.4 402 39.1
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.4e-64 251.5 558 31.9
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 7.0e-56 222.6 178 60.1
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.5e-55 220.3 186 64.0
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 4.0e-51 206.8 268 50.0
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 1.3e-49 201.8 107 90.7
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 8.3e-49 199.1 656 26.8
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.6e-47 194.9 106 89.6
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 4.6e-47 193.4 112 88.4
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.5e-45 188.3 563 27.7
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 4.9e-33 146.7 94 75.5
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.2e-32 144.1 126 62.7
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 1.6e-31 141.7 150 43.3
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 2.6e-26 124.4 77 77.9
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.2e-25 121.3 82 70.7
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.9e-25 120.2 78 74.4
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 6.4e-25 119.8 82 70.7
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.5e-23 114.0 132 50.8
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 5.6e-21 106.7 54 96.3
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 5.6e-21 106.7 84 60.7
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 1.3e-20 105.5 103 55.3
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.6e-13 79.3 49 75.5
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 1.3e-12 79.0 52 69.2
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 6.2e-12 76.6 135 39.3
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 1.3e-09 68.9 50 64.0
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 2.9e-09 67.8 169 29.0
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 6.7e-06 56.6 167 26.3


User provided reference genes

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