Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 6.6e-188 660.6 344 100.0
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.2e-158 562.0 349 85.7
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 3.9e-156 555.1 348 84.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 6.8e-153 544.3 354 83.1
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 7.3e-147 524.2 349 79.7
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.4e-145 520.0 349 79.4
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.4e-142 510.0 342 78.9
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 3.2e-142 508.8 336 79.5
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 3.5e-141 505.4 346 78.0
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.7e-140 503.1 337 77.7
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.3e-140 502.7 337 77.4
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 3.0e-140 502.3 345 77.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.9e-140 501.9 337 78.9
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 3.3e-139 498.8 342 78.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 5.6e-139 498.0 337 78.3
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 7.3e-139 497.7 342 76.0
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 9.6e-139 497.3 337 77.4
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.3e-138 496.9 340 76.8
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.6e-138 496.5 330 79.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.4e-137 493.4 336 76.8
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 2.4e-137 492.7 342 76.6
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 5.3e-137 491.5 336 76.5
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 6.9e-137 491.1 334 78.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 6.9e-137 491.1 338 77.2
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 9.0e-137 490.7 327 78.3
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 1.5e-136 490.0 336 76.5
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.6e-136 489.2 336 76.8
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 3.4e-136 488.8 341 77.7
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 9.9e-136 487.3 338 77.5
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.3e-135 486.9 336 77.7
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 4.9e-135 485.0 340 76.8
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.1e-134 483.8 346 73.7
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 3.2e-134 482.3 337 75.4
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 7.1e-134 481.1 339 74.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 9.3e-134 480.7 340 74.7
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.1e-133 479.6 349 73.1
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.5e-133 478.8 336 75.6
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 4.6e-133 478.4 337 75.7
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 4.6e-133 478.4 335 76.4
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.0e-132 477.2 329 75.4
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.8e-132 476.5 333 76.3
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 6.7e-132 474.6 334 75.1
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 1.9e-131 473.0 331 75.2
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 4.3e-131 471.9 354 72.6
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 7.4e-131 471.1 336 74.1
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 7.4e-131 471.1 336 74.1
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-130 470.3 336 73.8
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 2.1e-130 469.5 335 74.9
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 2.8e-130 469.2 334 74.0
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 2.8e-130 469.2 346 71.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 4.8e-130 468.4 342 71.9
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 6.2e-130 468.0 334 73.7
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 6.2e-130 468.0 317 77.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 6.2e-130 468.0 334 74.0
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 8.1e-130 467.6 336 73.8
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 8.1e-130 467.6 334 74.0
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.1e-129 467.2 336 72.6
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.4e-129 466.8 334 74.0
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 6.9e-129 464.5 334 73.4
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.9e-129 464.5 320 77.2
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-127 460.7 340 72.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-127 460.7 342 71.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 1.1e-126 457.2 336 72.0
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-126 456.8 334 74.9
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-126 456.8 334 74.9
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 4.2e-126 455.3 347 68.9
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 4.2e-126 455.3 337 74.5
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 9.3e-126 454.1 358 71.2
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.6e-125 453.4 346 69.4
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 2.7e-125 452.6 372 68.3
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.7e-125 452.6 334 71.3
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.5e-125 452.2 340 72.1
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.5e-125 452.2 339 70.2
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 4.6e-125 451.8 321 76.9
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 4.6e-125 451.8 338 70.4
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 6.0e-125 451.4 370 67.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 3.9e-124 448.7 337 70.3
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 1.5e-123 446.8 336 70.2
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 4.3e-123 445.3 368 66.0
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 5.7e-123 444.9 274 84.7
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 5.7e-123 444.9 338 71.3
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 5.7e-123 444.9 404 63.6
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 6.2e-122 441.4 332 70.2
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.1e-121 440.7 344 70.6
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 1.8e-121 439.9 370 65.4
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.9e-121 438.0 300 76.0
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-120 437.2 314 72.6
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 4.5e-120 435.3 312 73.1
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.5e-118 429.5 296 74.3
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 2.3e-116 422.9 334 66.8
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.9e-115 419.9 308 75.3
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 2.2e-114 416.4 311 70.1
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.0e-111 407.5 281 75.4
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.5e-111 404.4 332 67.8
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 8.5e-111 404.4 278 74.5
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.1e-109 399.8 329 66.3
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 2.0e-107 393.3 332 64.2
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 5.7e-107 391.7 253 81.4
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.7e-106 390.2 274 75.5
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 1.2e-104 384.0 337 62.0
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.7e-101 372.9 356 58.4
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 3.3e-99 365.9 322 62.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 7.4e-99 364.8 274 70.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 8.2e-98 361.3 305 65.6
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 2.4e-97 359.8 248 74.2
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 2.5e-94 349.7 208 84.6
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 3.2e-94 349.4 311 60.1
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 1.4e-92 344.0 243 77.4
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 2.0e-88 330.1 236 75.8
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 2.0e-88 330.1 301 58.5
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.7e-88 329.7 210 80.5
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 2.2e-87 326.6 205 82.0
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 7.7e-80 301.6 280 57.5
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 6.1e-77 292.0 203 76.4
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 8.6e-71 271.6 202 73.8
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 8.6e-71 271.6 206 69.9
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.6e-69 266.2 169 81.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.7e-63 247.3 306 45.4
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.1e-49 201.4 152 71.1
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 4.3e-46 189.5 144 72.2
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 3.1e-44 183.3 293 42.0
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.9e-31 139.8 104 68.3
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 9.6e-30 135.2 101 70.3
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.9e-25 120.9 110 60.9
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.1e-24 117.5 90 66.7
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 2.7e-24 117.1 219 37.4
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-20 105.1 61 83.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.1e-20 105.1 62 83.9
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.8e-20 104.4 62 85.5
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.1e-20 103.6 118 55.9
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.0e-20 103.2 62 85.5
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.2e-19 101.7 70 70.0
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.0e-19 100.9 246 35.4
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 6.4e-18 95.9 96 55.2
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.3e-17 92.0 56 83.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-16 91.7 55 85.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 1.6e-16 91.3 81 54.3
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 2.7e-16 90.5 99 47.5
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 3.7e-13 80.1 106 44.3
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 4.9e-10 69.7 37 86.5
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 6.5e-10 69.3 45 73.3
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 5.5e-09 66.2 43 74.4
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.6e-08 64.7 35 88.6
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 1.6e-08 64.7 35 88.6
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 6.0e-08 62.8 39 79.5
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 6.7e-07 59.3 118 35.6


User provided reference genes

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