Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 7.8e-48 193.4 91 100.0
CiPaw.13G149300 Carya illinoinensis HOM05D002917 ORTHO05D002431 1.1e-25 119.8 92 67.4
Haze_23253 Corylus avellana HOM05D002917 ORTHO05D002431 7.9e-24 113.6 96 64.6
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 3.3e-22 108.2 92 62.0
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 2.2e-21 105.5 95 61.1
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 3.7e-21 104.8 89 60.7
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 4.8e-21 104.4 91 60.4
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 1.1e-20 103.2 91 59.3
Lalb_Chr04g0249281 Lupinus albus HOM05D009394 ORTHO05D002431 1.1e-20 103.2 95 56.8
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 5.3e-20 100.9 93 55.9
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 6.9e-20 100.5 87 59.8
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 3.4e-19 98.2 91 56.0
Phvul.008G202100 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.4e-19 98.2 96 51.0
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.3e-18 96.3 89 57.3
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.2e-18 95.5 90 56.7
MD03G1164700 Malus domestica HOM05D012161 ORTHO05D002431 1.4e-17 92.8 92 58.7
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.4e-17 92.8 86 58.1
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 4.2e-17 91.3 102 52.9
LjContig00564g0021896 Lotus japonicus HOM05D009394 ORTHO05D002431 5.5e-17 90.9 105 47.6
Glyma.15G055400 Glycine max HOM05D009394 ORTHO05D002431 7.2e-17 90.5 93 49.5
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 9.3e-17 90.1 102 52.9
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 1.2e-16 89.7 90 52.2
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 1.6e-16 89.4 82 54.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.7e-16 88.6 89 51.7
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 6.1e-16 87.4 94 54.3
Glyma.02G278700 Glycine max HOM05D009394 ORTHO05D002431 1.4e-15 86.3 94 44.7
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 2.3e-15 85.5 87 54.0
Phvul.006G204500 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 3.0e-15 85.1 105 41.0
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.5e-14 82.8 96 47.9
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.5e-14 82.8 96 47.9
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 1.5e-14 82.8 96 47.9
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 1.9e-14 82.4 88 55.7
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 2.5e-14 82.0 110 43.6
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 3.3e-14 81.6 102 43.1
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 5.7e-14 80.9 86 53.5
MBI02_g18928_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 1.3e-13 79.7 101 48.5
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.7e-13 79.3 89 48.3
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 2.8e-13 78.6 101 43.6
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 3.7e-13 78.2 113 41.6
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 4.8e-13 77.8 72 56.9
arahy.Tifrunner.gnm1.ann1.S8RCCH Arachis hypogaea HOM05D009394 ORTHO05D002431 8.2e-13 77.0 113 40.7
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 1.1e-12 76.6 117 41.0
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 1.1e-12 76.6 86 40.7
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 2.4e-12 75.5 77 53.2
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 2.4e-12 75.5 85 52.9
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 5.3e-12 74.3 83 48.2
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 5.3e-12 74.3 91 47.3
Hma1.2p1_0375F.1_g138750 Hydrangea macrophylla HOM05D002917 ORTHO05D002431 9.1e-12 73.6 103 41.7
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 1.5e-11 72.8 107 43.9
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 2.0e-11 72.4 101 42.6
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.6e-11 72.0 107 43.9
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 2.6e-11 72.0 111 39.6
TPR.G16410 Trifolium pratense HOM05D009394 ORTHO05D002431 2.6e-11 72.0 142 32.4
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 4.5e-11 71.2 107 45.8
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 7.7e-11 70.5 105 41.9
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 1.0e-10 70.1 105 41.0
Psat5g191400 Pisum sativum HOM05D009394 ORTHO05D002431 1.0e-10 70.1 109 38.5
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 1.0e-10 70.1 97 45.4
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 1.0e-10 70.1 83 43.4
PGSC0003DMG400004715 Solanum tuberosum HOM05D023424 ORTHO05D002431 1.7e-10 69.3 90 44.4
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 2.2e-10 68.9 108 43.5
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 2.2e-10 68.9 96 43.8
Solyc12g099780.2 Solanum lycopersicum HOM05D023424 ORTHO05D002431 2.2e-10 68.9 93 44.1
Psat2g020800 Pisum sativum HOM05D009394 ORTHO05D002431 3.8e-10 68.2 135 33.3
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 3.8e-10 68.2 94 45.7
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 5.0e-10 67.8 108 43.5
DCAR_001372 Daucus carota HOM05D002917 ORTHO05D002431 5.0e-10 67.8 103 41.7
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 6.5e-10 67.4 106 41.5
CSS0021781 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 8.5e-10 67.0 103 40.8
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 8.5e-10 67.0 105 39.0
Sed0016172 Sechium edule HOM05D002917 ORTHO05D002431 8.5e-10 67.0 108 42.6
Cc07_g16300 Coffea canephora HOM05D002917 ORTHO05D002431 1.1e-09 66.6 103 41.7
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 1.1e-09 66.6 80 48.8
Sc03g0004380 Simmondsia chinensis HOM05D002917 ORTHO05D002431 1.1e-09 66.6 104 43.3
Medtr3g436750 Medicago truncatula HOM05D009394 ORTHO05D002431 1.9e-09 65.9 99 35.4
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.5e-09 65.5 44 70.5
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 3.2e-09 65.1 53 60.4
Peaxi162Scf00272g00824 Petunia axillaris HOM05D023424 ORTHO05D002431 3.2e-09 65.1 88 46.6
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 4.2e-09 64.7 102 37.3
Sed0016541 Sechium edule HOM05D002917 ORTHO05D002431 4.2e-09 64.7 106 43.4
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 7.2e-09 63.9 107 41.1
Glyma.07G232600 Glycine max HOM05D009394 ORTHO05D002431 1.2e-08 63.2 112 35.7
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 1.2e-08 63.2 72 50.0
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.1e-08 62.4 114 37.7
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 2.1e-08 62.4 60 55.0
Phvul.006G015600 Phaseolus vulgaris HOM05D009394 ORTHO05D002431 2.1e-08 62.4 57 56.1
SGA_v2.0_scaffold47G17704 Striga asiatica HOM05D002917 ORTHO05D002431 2.7e-08 62.0 92 40.2
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 3.6e-08 61.6 94 41.5
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 3.6e-08 61.6 94 41.5
MELO3C020960.2 Cucumis melo HOM05D002917 ORTHO05D002431 3.6e-08 61.6 108 40.7
ECA238G1147 Erigeron canadensis HOM05D002917 ORTHO05D002431 3.6e-08 61.6 106 36.8
FAN11G3775 Fragaria x ananassa HOM05D012161 ORTHO05D002431 3.6e-08 61.6 68 47.1
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 4.7e-08 61.2 94 40.4
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 4.7e-08 61.2 95 41.1
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 4.7e-08 61.2 95 41.1
Actinidia06975 Actinidia chinensis HOM05D009394 ORTHO05D002431 6.1e-08 60.8 77 40.3
CANSAT01G0734 Cannabis sativa HOM05D002917 ORTHO05D002431 7.9e-08 60.5 109 36.7
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 7.9e-08 60.5 100 38.0
vmacro12899 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 7.9e-08 60.5 102 38.2
BcaB04g19997 Brassica carinata HOM05D002917 ORTHO05D002431 1.0e-07 60.1 117 32.5
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.0e-07 60.1 67 53.7
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.0e-07 60.1 67 53.7
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 1.0e-07 60.1 67 53.7
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 1.4e-07 59.7 90 42.2
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 1.4e-07 59.7 90 42.2
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 1.4e-07 59.7 90 42.2
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.4e-07 59.7 52 61.5
Aa31LG3G17190 Aethionema arabicum HOM05D002917 ORTHO05D002431 1.8e-07 59.3 114 36.0
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 1.8e-07 59.3 52 63.5
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 2.3e-07 58.9 64 50.0
BcaC03g18283 Brassica carinata HOM05D002917 ORTHO05D002431 2.3e-07 58.9 117 31.6
A02p43530 Brassica napus HOM05D002917 ORTHO05D002431 2.3e-07 58.9 117 31.6
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 2.3e-07 58.9 66 51.5
Peaxi162Scf00133g01414 Petunia axillaris HOM05D002917 ORTHO05D002431 2.3e-07 58.9 101 39.6
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 3.0e-07 58.5 95 38.9
C02p63620 Brassica napus HOM05D002917 ORTHO05D002431 3.0e-07 58.5 118 31.4
CARHR278860 Cardamine hirsuta HOM05D002917 ORTHO05D002431 3.0e-07 58.5 116 32.8
BcaB07g29762 Brassica carinata HOM05D002917 ORTHO05D002431 3.9e-07 58.2 116 31.9
HanXRQChr09g0259721 Helianthus annuus HOM05D002917 ORTHO05D002431 3.9e-07 58.2 110 31.8
Carub.0008s2568 Capsella rubella HOM05D002917 ORTHO05D002431 5.1e-07 57.8 83 41.0
CsaV3_6G042410 Cucumis sativus L. HOM05D002917 ORTHO05D002431 5.1e-07 57.8 106 40.6
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 5.1e-07 57.8 55 58.2
PGR004G1449 Punica granatum HOM05D002917 ORTHO05D002431 5.1e-07 57.8 105 38.1
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 6.7e-07 57.4 117 31.6
MELO3C007484.2 Cucumis melo HOM05D002917 ORTHO05D002431 6.7e-07 57.4 107 38.3
FvH4_3g27760 Fragaria vesca HOM05D012161 ORTHO05D002431 6.7e-07 57.4 59 52.5
HanXRQChr15g0493491 Helianthus annuus HOM05D002917 ORTHO05D002431 8.8e-07 57.0 111 32.4
Potri.007G080800 Populus trichocarpa HOM05D002917 ORTHO05D002431 8.8e-07 57.0 107 34.6
QL06p032044 Quercus lobata HOM05D002917 ORTHO05D002431 8.8e-07 57.0 62 56.5
Potri.005G084700 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.1e-06 56.6 106 35.8
PGSC0003DMG400016551 Solanum tuberosum HOM05D002917 ORTHO05D002431 1.1e-06 56.6 81 48.1
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 1.5e-06 56.2 117 32.5
Aa31LG1G17080 Aethionema arabicum HOM05D002917 ORTHO05D002431 2.0e-06 55.8 76 43.4
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 2.0e-06 55.8 73 47.9
ClCG01G016140 Citrullus lanatus HOM05D002917 ORTHO05D002431 2.0e-06 55.8 106 37.7
Lj6g0020665 Lotus japonicus HOM05D009394 ORTHO05D002431 2.0e-06 55.8 71 47.9
BolC2t12428H Brassica oleracea HOM05D002917 ORTHO05D002431 2.6e-06 55.5 114 31.6
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 3.3e-06 55.1 114 31.6
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 3.3e-06 55.1 114 31.6
CAN.G1619.3 Capsicum annuum HOM05D002917 ORTHO05D002431 4.4e-06 54.7 108 37.0
Sp2g27930 Schrenkiella parvula HOM05D002917 ORTHO05D002431 4.4e-06 54.7 118 30.5
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 5.7e-06 54.3 86 41.9
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 5.7e-06 54.3 86 41.9
BcaB02g09835 Brassica carinata HOM05D002917 ORTHO05D002431 9.7e-06 53.5 125 28.0
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 9.7e-06 53.5 68 45.6
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 9.7e-06 53.5 68 45.6


User provided reference genes

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