Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.2e-45 186.0 88 100.0
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 7.8e-45 183.3 88 97.7
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.3e-44 182.6 88 97.7
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.3e-44 182.6 88 97.7
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.3e-44 182.6 88 97.7
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.7e-44 182.2 88 96.6
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 96.6
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 96.6
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 96.6
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 97.7
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 96.6
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.0e-44 181.4 88 96.6
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 3.9e-44 181.0 88 96.6
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 3.9e-44 181.0 88 96.6
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 3.9e-44 181.0 88 96.6
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.9e-44 181.0 88 96.6
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.6e-44 180.3 88 96.6
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 8.7e-44 179.9 88 95.5
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 8.7e-44 179.9 88 96.6
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 95.5
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 95.5
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 96.6
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 96.6
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 96.6
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 95.5
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.1e-43 179.5 88 95.5
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.5e-43 179.1 88 95.5
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.5e-43 179.1 88 95.5
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.9e-43 178.7 88 95.5
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 2.5e-43 178.3 88 95.5
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 3.3e-43 177.9 88 94.3
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 3.3e-43 177.9 88 95.5
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 3.3e-43 177.9 88 94.3
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.3e-43 177.9 88 95.5
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 3.3e-43 177.9 88 95.5
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 4.3e-43 177.6 88 94.3
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.3e-43 177.6 88 94.3
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 5.6e-43 177.2 88 95.5
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 5.6e-43 177.2 88 94.3
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 5.6e-43 177.2 88 94.3
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 7.3e-43 176.8 88 94.3
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.6e-43 176.4 88 94.3
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.6e-43 176.4 88 94.3
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 9.6e-43 176.4 87 95.4
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 85 96.5
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 85 96.5
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.3e-42 176.0 89 95.5
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.3e-42 176.0 88 93.2
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.3e-42 176.0 86 95.3
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.3e-42 176.0 88 93.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.6e-42 175.6 88 95.5
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.6e-42 175.6 88 93.2
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.6e-42 175.6 88 94.3
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.1e-42 175.3 88 94.3
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.1e-42 175.3 88 93.2
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.1e-42 175.3 87 94.3
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.1e-42 175.3 88 94.3
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 3.6e-42 174.5 89 94.4
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.6e-42 174.5 88 92.0
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 4.8e-42 174.1 88 94.3
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 8.1e-42 173.3 82 98.8
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 1.1e-41 172.9 88 93.2
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 1.1e-41 172.9 88 94.3
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.4e-41 172.6 88 94.3
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.8e-41 172.2 88 93.2
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 92.0
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 92.0
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 2.4e-41 171.8 88 92.0
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.4e-41 171.8 85 95.3
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 2.4e-41 171.8 81 97.5
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.1e-41 171.4 86 94.2
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.1e-41 171.4 88 90.9
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 4.0e-41 171.0 90 91.1
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 4.0e-41 171.0 90 92.2
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 4.0e-41 171.0 88 94.3
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 4.0e-41 171.0 88 94.3
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 4.0e-41 171.0 89 93.3
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 4.0e-41 171.0 82 96.3
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 5.3e-41 170.6 81 97.5
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 6.9e-41 170.2 88 90.9
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 6.9e-41 170.2 88 90.9
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 6.9e-41 170.2 88 93.2
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 9.0e-41 169.9 81 97.5
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 9.0e-41 169.9 82 96.3
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-40 169.5 88 92.0
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.2e-40 169.5 88 88.6
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.2e-40 169.5 80 97.5
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.2e-40 169.5 88 93.2
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.5e-40 169.1 90 90.0
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.5e-40 169.1 90 90.0
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-40 168.7 82 96.3
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.6e-40 168.3 81 96.3
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.4e-40 167.9 82 95.1
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.4e-40 167.9 88 88.6
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 4.5e-40 167.5 88 90.9
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 5.8e-40 167.2 88 88.6
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 5.8e-40 167.2 82 93.9
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 7.6e-40 166.8 85 90.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 7.6e-40 166.8 86 90.7
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 7.6e-40 166.8 89 92.1
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 9.9e-40 166.4 84 91.7
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.3e-39 166.0 85 92.9
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.3e-39 166.0 80 95.0
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.7e-39 165.6 97 84.5
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.7e-39 165.6 88 90.9
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.7e-39 165.6 79 96.2
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.7e-39 165.6 83 92.8
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.2e-39 165.2 88 87.5
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.2e-39 165.2 87 90.8
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.2e-39 165.2 82 93.9
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.8e-39 164.5 82 93.9
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 4.9e-39 164.1 91 89.0
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.9e-39 164.1 82 93.9
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 6.4e-39 163.7 82 90.2
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 8.4e-39 163.3 88 86.4
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.9e-38 162.2 83 89.2
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.9e-38 162.2 99 81.8
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 2.4e-38 161.8 88 86.4
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.4e-38 161.8 82 92.7
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 4.2e-38 161.0 80 91.2
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 4.2e-38 161.0 80 91.2
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 4.2e-38 161.0 81 90.1
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 5.4e-38 160.6 75 97.3
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.2e-37 159.5 78 92.3
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.6e-37 159.1 78 92.3
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 2.1e-37 158.7 76 93.4
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.1e-37 158.7 78 93.6
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 4.6e-37 157.5 76 94.7
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.3e-36 155.2 83 91.6
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 2.3e-36 155.2 75 94.7
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 3.0e-36 154.8 88 80.7
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 5.1e-36 154.1 74 93.2
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 6.7e-36 153.7 83 83.1
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.5e-35 152.5 77 92.2
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.5e-35 152.5 83 83.1
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.9e-35 152.1 83 85.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.9e-35 152.1 83 85.5
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.3e-35 151.4 82 84.1
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 4.3e-35 151.0 80 86.2
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 7.4e-35 150.2 74 90.5
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 7.4e-35 150.2 74 90.5
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 7.4e-35 150.2 74 90.5
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 7.4e-35 150.2 74 90.5
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 9.9e-32 139.8 70 87.1
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.3e-31 139.4 78 78.2
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 4.9e-31 137.5 85 82.4
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.4e-30 136.0 70 91.4
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.7e-29 131.7 68 83.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.5e-29 131.3 91 69.2
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 5.1e-28 127.5 69 78.3
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.9e-27 125.6 64 89.1
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 7.4e-27 123.6 66 87.9
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.8e-25 119.0 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 4.5e-24 114.4 63 82.5
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 3.5e-21 104.8 77 63.6
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 4.6e-21 104.4 55 89.1
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.0e-20 103.2 48 97.9
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 3.7e-18 94.7 66 72.7
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.2e-16 89.7 44 90.9
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.0e-16 89.0 51 80.4
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 4.2e-14 81.3 46 78.3
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.5e-14 80.9 38 92.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 5.5e-14 80.9 88 53.4
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.4e-14 80.1 67 64.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.6e-13 79.3 37 97.3
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.7e-13 78.6 47 80.9
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-13 77.4 39 87.2
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 6.1e-13 77.4 53 71.7
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-12 76.6 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.0e-12 76.6 39 82.1
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.3e-11 71.2 38 89.5
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.8e-10 68.6 38 84.2
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 8.2e-10 67.0 51 60.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.1e-09 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.5e-08 61.2 38 81.6
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.5e-06 55.5 29 82.8


User provided reference genes

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