Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1258.8 636 100.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1203.0 636 94.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1197.6 636 94.3
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1194.1 636 93.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1193.7 636 93.7
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1193.3 636 93.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1191.4 636 93.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1186.8 636 92.8
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1185.2 636 92.8
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 636 92.0
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 634 93.2
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1183.7 646 92.0
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1182.9 635 92.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1182.9 634 92.4
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1182.2 633 93.5
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1182.2 636 92.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1181.4 636 92.0
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1181.0 636 92.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1180.2 636 92.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 636 91.5
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 633 92.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 636 91.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1177.5 636 92.0
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1177.5 635 92.8
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1176.4 636 91.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 633 92.3
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1174.5 636 91.5
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 636 91.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 636 91.4
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 636 91.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 631 92.2
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 636 91.4
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 633 92.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1167.1 636 90.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 635 90.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 632 91.8
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 632 91.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 633 91.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 630 91.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 635 91.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 636 90.4
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 636 91.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 635 90.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 636 90.7
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 631 91.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 636 90.1
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 636 89.9
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 632 90.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 636 90.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 632 90.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 636 91.8
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 636 90.1
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 635 89.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 636 90.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 634 90.2
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 628 91.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 636 89.9
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 632 90.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 632 90.7
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 632 90.7
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 632 91.6
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 636 88.7
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 636 88.7
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 636 89.0
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 632 89.7
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 636 88.5
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 636 88.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 636 89.3
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 633 88.2
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 634 88.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 635 89.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 629 89.3
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 636 88.1
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 636 88.5
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 636 88.5
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 636 88.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 663 86.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 636 88.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 636 88.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 636 88.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 636 88.4
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.9
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 631 88.9
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 629 88.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 629 88.4
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 636 86.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 632 88.4
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 635 87.7
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 636 86.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 636 85.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 631 86.5
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 633 86.6
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 636 86.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 636 86.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 633 86.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 631 86.1
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 646 85.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1088.6 636 84.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 627 84.8
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 627 84.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 4.4e-312 1073.5 581 91.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 627 83.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 6.2e-301 1036.9 630 80.5
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.1e-292 1009.6 631 78.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 4.9e-290 1000.7 541 92.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 6.9e-284 980.3 533 90.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.5e-281 971.8 533 89.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 5.7e-270 934.1 634 75.6
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.8e-269 931.0 647 72.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.6e-267 925.2 499 91.8
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 7.2e-265 917.1 628 72.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.7e-261 906.0 648 71.1
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.9e-251 870.9 502 88.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 6.5e-250 867.5 502 87.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.9e-249 865.9 633 73.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 5.5e-241 837.8 635 71.2
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.3e-237 826.6 637 66.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 3.5e-235 818.5 497 81.3
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.6e-227 791.6 638 62.7
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 3.0e-202 709.1 443 80.8
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.2e-196 688.7 534 69.5
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.8e-183 646.7 644 53.6
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.5e-179 632.5 445 73.9
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-177 627.5 354 88.1
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.7e-169 598.6 411 75.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.7e-163 579.7 315 91.7
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 3.1e-151 539.7 296 90.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.7e-139 500.0 278 90.3
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 5.7e-113 412.5 527 43.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.7e-101 374.4 201 92.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.6e-92 342.8 240 72.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.6e-86 323.2 184 87.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.6e-83 314.7 230 70.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.9e-79 301.2 163 90.2
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.8e-75 286.6 636 34.1
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 2.4e-74 284.3 163 85.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.8e-59 234.2 273 50.2
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.7e-54 217.6 230 56.5
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-47 195.3 104 93.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.2e-41 175.6 104 81.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 8.5e-40 169.5 104 77.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 5.5e-39 166.8 99 81.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 4.7e-38 163.7 160 59.4
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 2.3e-37 161.4 90 88.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 9.7e-36 156.0 85 82.4
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 6.9e-34 149.8 125 63.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 9.1e-34 149.4 91 82.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.5e-33 148.7 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.5e-32 143.3 74 86.5
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 6.7e-21 106.7 116 51.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 3.3e-20 104.4 53 94.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.5e-17 94.4 63 68.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 5.9e-17 93.6 57 77.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.9e-17 93.6 60 76.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.2e-16 91.7 49 87.8
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.4e-12 77.8 56 62.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 7.7e-09 66.6 42 73.8


User provided reference genes

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