Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p009333 Quercus lobata HOM05D000492 ORTHO05D338213 1.5e-37 159.1 82 100.0
QL06p046590 Quercus lobata HOM05D000001 ORTHO05D000003 1.1e-21 106.3 62 88.7
QL04p027997 Quercus lobata HOM05D000005 ORTHO05D000294 6.2e-20 100.5 62 83.9
Prupe.7G156800 Prunus persica HOM05D000492 ORTHO05D005571 2.9e-17 91.7 62 74.2
MD02G1144800 Malus domestica HOM05D000492 ORTHO05D005571 6.5e-17 90.5 62 72.6
Dinv13510 Davidia involucrata HOM05D000492 ORTHO05D005571 8.4e-17 90.1 62 69.4
FAN19G2526 Fragaria x ananassa HOM05D000492 ORTHO05D005571 8.4e-17 90.1 62 71.0
FAN26G1109 Fragaria x ananassa HOM05D000492 ORTHO05D005571 3.2e-16 88.2 62 71.0
FvH4_1g13020 Fragaria vesca HOM05D000492 ORTHO05D005571 4.2e-16 87.8 62 69.4
Cc07_g09710 Coffea canephora HOM05D000492 ORTHO05D005571 5.5e-16 87.4 62 66.1
FAN28G0396 Fragaria x ananassa HOM05D000492 ORTHO05D005571 7.1e-16 87.0 62 69.4
Hma1.2p1_0789F.1_g218260 Hydrangea macrophylla HOM05D000492 ORTHO05D005571 7.1e-16 87.0 62 67.7
RcHm_v2.0_Chr2g0101181 Rosa chinensis HOM05D000492 ORTHO05D005571 7.1e-16 87.0 62 69.4
Cpa.g.sc6.136 Carica papaya HOM05D000492 ORTHO05D005571 1.2e-15 86.3 62 64.5
Ciclev10027293m.g Citrus clementina HOM05D000492 ORTHO05D005571 1.6e-15 85.9 63 71.4
FAN23G2283 Fragaria x ananassa HOM05D000492 ORTHO05D005571 2.7e-15 85.1 62 67.7
Rhsim13G0206600 Rhododendron simsii HOM05D000492 ORTHO05D005571 2.7e-15 85.1 62 69.4
Sabra07G0020100 Salix brachista HOM05D000492 ORTHO05D005571 2.7e-15 85.1 62 66.1
TWI73G1112 Tripterygium wilfordii HOM05D000492 ORTHO05D005571 3.5e-15 84.7 62 67.7
Glyma.11G070000 Glycine max HOM05D000492 ORTHO05D005571 6.0e-15 84.0 62 64.5
Lj2g0024517 Lotus japonicus HOM05D000492 ORTHO05D005571 6.0e-15 84.0 62 64.5
Lalb_Chr09g0322221 Lupinus albus HOM05D000492 ORTHO05D005571 6.0e-15 84.0 62 64.5
TWI79G1067 Tripterygium wilfordii HOM05D000492 ORTHO05D005571 7.9e-15 83.6 63 69.8
Lalb_Chr16g0377741 Lupinus albus HOM05D000492 ORTHO05D005571 1.0e-14 83.2 62 62.9
TPR.G2376 Trifolium pratense HOM05D000492 ORTHO05D005571 1.0e-14 83.2 62 64.5
arahy.Tifrunner.gnm1.ann1.Q9S7W6 Arachis hypogaea HOM05D000492 ORTHO05D005571 1.3e-14 82.8 62 62.9
Ca_24862_v3 Cicer arietinum L. HOM05D000492 ORTHO05D005571 1.3e-14 82.8 62 62.9
Glyma.01G173100 Glycine max HOM05D000492 ORTHO05D005571 1.3e-14 82.8 62 62.9
Medtr5g020670 Medicago truncatula HOM05D000492 ORTHO05D005571 1.3e-14 82.8 62 62.9
Psat2g158400 Pisum sativum HOM05D000492 ORTHO05D005571 1.3e-14 82.8 62 62.9
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 2.3e-14 82.0 62 64.5
Potri.007G023100 Populus trichocarpa HOM05D000492 ORTHO05D005571 2.3e-14 82.0 62 64.5
Atru.chr3.606 Acer truncatum HOM05D000492 ORTHO05D005571 3.0e-14 81.6 62 69.4
Cfa004985 Carpinus fangiana HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 67.7
Haze_02404 Corylus avellana HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 67.7
Duzib187G0814 Durio zibethinus HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 64.5
Oeu035598.1 Olea europaea HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 66.1
Phvul.002G032100 Phaseolus vulgaris HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 62.9
Potri.005G121300 Populus trichocarpa HOM05D000492 ORTHO05D005571 3.9e-14 81.3 62 64.5
CSS0044522 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D005571 5.1e-14 80.9 62 64.5
DCAR_017301 Daucus carota HOM05D000492 ORTHO05D005571 5.1e-14 80.9 72 62.5
VMungo1215G1439 Vigna mungo HOM05D000492 ORTHO05D005571 5.1e-14 80.9 62 61.3
DCAR_025951 Daucus carota HOM05D000492 ORTHO05D005571 6.7e-14 80.5 62 64.5
CiPaw.06G134500 Carya illinoinensis HOM05D000492 ORTHO05D005571 8.7e-14 80.1 62 66.1
Dinv23507 Davidia involucrata HOM05D000492 ORTHO05D005571 1.5e-13 79.3 62 61.3
COL.COLO4_22051 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.9e-13 79.0 63 66.7
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.9e-13 79.0 61 65.6
Nitab4.5_0000178g0230 Nicotiana tabacum HOM05D000492 ORTHO05D005571 1.9e-13 79.0 59 62.7
Manes.01G136800 Manihot esculenta HOM05D000492 ORTHO05D005571 3.3e-13 78.2 62 61.3
Lj2P454T47 Lonicera japonica HOM05D000492 ORTHO05D005571 4.3e-13 77.8 61 63.9
Nitab4.5_0006115g0010 Nicotiana tabacum HOM05D000492 ORTHO05D005571 5.7e-13 77.4 59 62.7
Nitab4.5_0014356g0010 Nicotiana tabacum HOM05D000492 ORTHO05D005571 5.7e-13 77.4 63 65.1
Rhsim11G0178700 Rhododendron simsii HOM05D000492 ORTHO05D005571 7.4e-13 77.0 62 61.3
Solyc02g085090.1 Solanum lycopersicum HOM05D000492 ORTHO05D005571 7.4e-13 77.0 63 63.5
Sopen02g029780 Solanum pennellii HOM05D000492 ORTHO05D005571 7.4e-13 77.0 63 63.5
TAR381G0129 Trochodendron aralioides HOM05D000492 ORTHO05D005571 7.4e-13 77.0 62 61.3
QL11p044600 Quercus lobata HOM05D000492 ORTHO05D005571 9.6e-13 76.6 62 62.9
Sabra09G0090300 Salix brachista HOM05D000492 ORTHO05D005571 9.6e-13 76.6 62 59.7
Thecc.01G032900 Theobroma cacao HOM05D000492 ORTHO05D005571 1.6e-12 75.9 62 59.7
CAN.G358.64 Capsicum annuum HOM05D000492 ORTHO05D005571 2.8e-12 75.1 59 61.0
Nitab4.5_0000136g0300 Nicotiana tabacum HOM05D000492 ORTHO05D005571 2.8e-12 75.1 59 62.7
PGSC0003DMG400003603 Solanum tuberosum HOM05D000492 ORTHO05D005571 3.7e-12 74.7 63 61.9
THA.LOC104807460 Tarenaya hassleriana HOM05D000492 ORTHO05D005571 3.7e-12 74.7 56 67.9
AL3G51530 Arabidopsis lyrata HOM05D000492 ORTHO05D005571 6.2e-12 73.9 60 65.0
MD05G1064700 Malus domestica HOM05D000492 ORTHO05D005571 6.2e-12 73.9 62 59.7
TWI09G0127 Tripterygium wilfordii HOM05D000492 ORTHO05D005571 6.2e-12 73.9 62 62.9
EL10Ac6g15544 Beta vulgaris HOM05D000492 ORTHO05D005571 8.2e-12 73.6 63 57.1
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
BcaC06g36394 Brassica carinata HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
A07p02440 Brassica napus HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
C07p04590 Brassica napus HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
BolC7t40860H Brassica oleracea HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
BraA07t28040Z Brassica rapa HOM05D000492 ORTHO05D005571 8.2e-12 73.6 56 64.3
Cc02_g17400 Coffea canephora HOM05D000492 ORTHO05D005571 8.2e-12 73.6 62 53.2
Migut.H00963 Erythranthe guttata HOM05D000492 ORTHO05D005571 8.2e-12 73.6 62 59.7
TAR625G0261 Trochodendron aralioides HOM05D000492 ORTHO05D005571 1.1e-11 73.2 62 56.5
BcaB03g16616 Brassica carinata HOM05D000492 ORTHO05D005571 1.4e-11 72.8 56 64.3
AUR62007582 Chenopodium quinoa HOM05D000492 ORTHO05D005571 1.4e-11 72.8 63 55.6
CARHR108860 Cardamine hirsuta HOM05D000492 ORTHO05D005571 1.8e-11 72.4 54 66.7
Eucgr.I02426 Eucalyptus grandis HOM05D000492 ORTHO05D005571 1.8e-11 72.4 62 58.1
Gohir.A11G043200 Gossypium hirsutum HOM05D000492 ORTHO05D005571 1.8e-11 72.4 47 74.5
Gohir.D11G046700 Gossypium hirsutum HOM05D000492 ORTHO05D005571 1.8e-11 72.4 47 74.5
Gorai.007G050200 Gossypium raimondii HOM05D000492 ORTHO05D005571 1.8e-11 72.4 47 74.5
Hund13989 Selenicereus undatus HOM05D000492 ORTHO05D005571 1.8e-11 72.4 63 55.6
GSVIVG01018937001 Vitis vinifera HOM05D000492 ORTHO05D005571 2.4e-11 72.0 62 58.1
Aqoxy6G01140 Aquilegia oxysepala HOM05D000492 ORTHO05D005571 3.1e-11 71.6 56 60.7
ClCG01G019670 Citrullus lanatus HOM05D002605 ORTHO05D005571 3.1e-11 71.6 63 55.6
FvH4_2g09080 Fragaria vesca HOM05D000492 ORTHO05D005571 3.1e-11 71.6 60 63.3
FAN15G1478 Fragaria x ananassa HOM05D000492 ORTHO05D005571 3.1e-11 71.6 60 63.3
Oeu003723.1 Olea europaea HOM05D000492 ORTHO05D005571 3.1e-11 71.6 81 46.9
RcHm_v2.0_Chr6g0264961 Rosa chinensis HOM05D000492 ORTHO05D005571 3.1e-11 71.6 60 63.3
AUR62004069 Chenopodium quinoa HOM05D000492 ORTHO05D005571 4.0e-11 71.2 63 55.6
MD15G1259000 Malus domestica HOM05D000492 ORTHO05D005571 4.0e-11 71.2 51 70.6
ECA246G0999 Erigeron canadensis HOM05D000492 ORTHO05D005571 5.3e-11 70.9 63 55.6
Nn1g04943 Nelumbo nucifera HOM05D000492 ORTHO05D005571 5.3e-11 70.9 62 58.1
Prupe.8G094700 Prunus persica HOM05D000492 ORTHO05D005571 5.3e-11 70.9 62 53.2
AT2G18260 Arabidopsis thaliana HOM05D000492 ORTHO05D005571 6.9e-11 70.5 60 63.3
Potri.009G117900 Populus trichocarpa HOM05D000492 ORTHO05D005571 6.9e-11 70.5 62 58.1
Atru.chr5.3036 Acer truncatum HOM05D000492 ORTHO05D005571 1.2e-10 69.7 63 61.9
Thhalv10022793m.g Eutrema salsugineum HOM05D000492 ORTHO05D005571 1.5e-10 69.3 60 63.3
Lsat_1_v5_gn_3_76040 Lactuca sativa HOM05D000492 ORTHO05D005571 1.5e-10 69.3 56 60.7
Sp3g31680 Schrenkiella parvula HOM05D000492 ORTHO05D005571 1.5e-10 69.3 60 63.3
Lj9C374T21 Lonicera japonica HOM05D000492 ORTHO05D005571 2.0e-10 68.9 62 54.8
Manes.11G086000 Manihot esculenta HOM05D000492 ORTHO05D005571 2.0e-10 68.9 54 61.1
A06p33320 Brassica napus HOM05D000492 ORTHO05D005571 2.6e-10 68.6 56 62.5
C03p59060 Brassica napus HOM05D000492 ORTHO05D005571 2.6e-10 68.6 56 62.5
Carub.0003s3244 Capsella rubella HOM05D000492 ORTHO05D005571 2.6e-10 68.6 60 61.7
CsaV3_6G046340 Cucumis sativus L. HOM05D000492 ORTHO05D005571 2.6e-10 68.6 63 54.0
FAN20G1231 Fragaria x ananassa HOM05D000492 ORTHO05D005571 4.5e-10 67.8 60 60.0
BraA06t26261Z Brassica rapa HOM05D000492 ORTHO05D005571 5.8e-10 67.4 56 60.7
COL.COLO4_25950 Corchorus olitorius HOM05D000492 ORTHO05D005571 5.8e-10 67.4 54 59.3
Ah.02g125090 Amaranthus hybridus HOM05D000492 ORTHO05D005571 7.6e-10 67.0 63 52.4
MSTRG.27694 Avicennia marina HOM05D000492 ORTHO05D005571 1.7e-09 65.9 62 53.2
BcaB08g34802 Brassica carinata HOM05D000492 ORTHO05D005571 2.2e-09 65.5 57 64.9
BolC3t18167H Brassica oleracea HOM05D000492 ORTHO05D005571 2.2e-09 65.5 56 60.7
HanXRQChr16g0530631 Helianthus annuus HOM05D000492 ORTHO05D005571 2.9e-09 65.1 63 49.2
Prupe.8G095300 Prunus persica HOM05D000492 ORTHO05D005571 2.9e-09 65.1 54 55.6
Duzib248G0786 Durio zibethinus HOM05D000492 ORTHO05D005571 8.4e-09 63.5 48 64.6
CSS0049629 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D005571 2.5e-08 62.0 48 62.5
Nitab4.5_0003526g0050 Nicotiana tabacum HOM05D000492 ORTHO05D005571 3.2e-08 61.6 62 46.8
SGA_v2.0_scaffold54G19549 Striga asiatica HOM05D000492 ORTHO05D005571 3.2e-08 61.6 63 49.2
PSO541G5906 Papaver somniferum HOM05D000492 ORTHO05D005571 7.1e-08 60.5 56 53.6
PGR119G0121 Punica granatum HOM05D000492 ORTHO05D005571 9.3e-08 60.1 70 48.6
Sc03g0003080 Simmondsia chinensis HOM05D000492 ORTHO05D005571 1.2e-07 59.7 60 51.7
Peaxi162Scf00016g00064 Petunia axillaris HOM05D000492 ORTHO05D005571 1.6e-07 59.3 62 46.8
Sed0008880 Sechium edule HOM05D000492 ORTHO05D005571 1.6e-07 59.3 62 50.0
PSO675G4737 Papaver somniferum HOM05D000492 ORTHO05D005571 2.1e-07 58.9 56 53.6
PSO541G3610 Papaver somniferum HOM05D000492 ORTHO05D005571 2.7e-07 58.5 56 51.8
Nitab4.5_0000308g0280 Nicotiana tabacum HOM05D000492 ORTHO05D005571 4.6e-07 57.8 62 45.2
CAN.G1058.4 Capsicum annuum HOM05D000492 ORTHO05D005571 6.1e-07 57.4 63 42.9
arahy.Tifrunner.gnm1.ann1.K4VY4I Arachis hypogaea HOM05D000492 ORTHO05D000499 1.3e-06 56.2 52 53.8
PGSC0003DMG400000733 Solanum tuberosum HOM05D000492 ORTHO05D005571 1.3e-06 56.2 62 43.5
Aa31LG8G15750 Aethionema arabicum HOM05D000492 ORTHO05D005571 1.8e-06 55.8 41 63.4
Migut.N01246 Erythranthe guttata HOM05D000492 ORTHO05D005571 1.8e-06 55.8 73 42.5
Solyc01g109750.2 Solanum lycopersicum HOM05D000492 ORTHO05D005571 3.0e-06 55.1 41 56.1
Sopen01g051940 Solanum pennellii HOM05D000492 ORTHO05D005571 3.0e-06 55.1 41 56.1
BcaC06g33386 Brassica carinata HOM05D000492 ORTHO05D000499 5.1e-06 54.3 37 62.2
C07p46940 Brassica napus HOM05D000492 ORTHO05D000499 5.1e-06 54.3 37 62.2
BolC7t45210H Brassica oleracea HOM05D000492 ORTHO05D000499 5.1e-06 54.3 37 62.2
BraA03t13986Z Brassica rapa HOM05D000492 ORTHO05D000499 5.1e-06 54.3 37 62.2
MBI11_g15514_MAGBIO Magnolia biondii HOM05D000492 ORTHO05D005571 5.1e-06 54.3 56 46.4
BcaC06g32909 Brassica carinata HOM05D000492 ORTHO05D000499 6.7e-06 53.9 37 62.2
BcaC06g32910 Brassica carinata HOM05D000492 ORTHO05D000499 6.7e-06 53.9 37 62.2
MD12G1041700 Malus domestica HOM05D000492 ORTHO05D000499 6.7e-06 53.9 44 56.8
MD14G1040900 Malus domestica HOM05D000492 ORTHO05D000499 6.7e-06 53.9 44 56.8
unitig_22.g6862 Utricularia gibba HOM05D000492 ORTHO05D005571 6.7e-06 53.9 45 60.0
HanXRQChr05g0132561 Helianthus annuus HOM05D000492 ORTHO05D000499 8.7e-06 53.5 55 50.9


User provided reference genes

Program Settings