Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 2.9e-279 964.5 472 100.0
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 2.9e-239 831.6 471 84.5
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.8e-233 812.4 473 82.0
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 6.2e-213 744.2 472 74.6
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 2.4e-201 705.7 471 72.2
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 2.8e-197 692.2 469 72.5
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.8e-197 691.4 473 69.6
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 2.0e-195 686.0 472 69.1
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 4.9e-194 681.4 484 69.6
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 4.2e-193 678.3 473 70.4
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.7e-192 675.6 473 70.2
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 1.0e-191 673.7 472 68.9
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.1e-190 670.2 471 69.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.5e-190 669.8 473 68.9
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.3e-190 668.3 473 68.7
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-188 663.7 473 69.3
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 2.0e-187 659.4 566 61.8
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 3.4e-187 658.7 474 68.8
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 4.5e-187 658.3 474 67.3
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 3.5e-184 648.7 497 65.6
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 7.9e-184 647.5 471 67.1
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 3.9e-183 645.2 472 66.3
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 3.3e-182 642.1 474 65.4
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.3e-182 642.1 460 69.6
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 4.3e-182 641.7 475 66.3
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 4.0e-180 635.2 472 65.5
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.3e-178 630.2 471 66.5
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.9e-178 628.2 487 65.1
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.5e-176 622.1 481 64.4
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.3e-175 619.4 474 63.7
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 6.7e-175 617.8 476 63.4
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.5e-174 616.7 473 64.7
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 7.4e-174 614.4 471 63.5
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 3.1e-172 609.0 530 59.2
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 6.9e-172 607.8 472 59.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.0e-170 604.0 455 64.2
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 5.0e-170 601.7 484 60.7
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 8.5e-170 600.9 469 63.3
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.4e-169 600.1 523 57.2
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 5.5e-169 598.2 475 62.3
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.0e-167 594.0 472 63.6
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 6.7e-167 591.3 477 61.4
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.7e-165 586.6 464 60.6
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.1e-161 573.9 373 73.7
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.9e-161 573.2 472 59.5
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 9.4e-161 570.9 471 60.5
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 9.7e-158 560.8 472 59.3
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 2.4e-156 556.2 473 58.8
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 2.2e-154 549.7 471 58.2
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 5.0e-154 548.5 499 57.7
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 6.5e-154 548.1 388 69.1
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 6.7e-151 538.1 387 66.9
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.7e-150 535.0 476 58.2
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.4e-148 530.4 474 56.3
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 4.1e-148 528.9 474 56.1
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 5.3e-148 528.5 473 56.7
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.3e-146 523.9 468 55.6
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 1.5e-145 520.4 468 57.9
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.5e-145 519.6 475 54.3
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 3.2e-145 519.2 471 55.4
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 4.2e-145 518.8 469 55.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 7.2e-145 518.1 473 54.1
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 9.4e-145 517.7 471 57.5
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.6e-144 516.9 473 55.4
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.0e-143 514.2 511 51.9
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 1.4e-143 513.8 471 56.3
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.5e-142 510.4 488 54.7
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.0e-142 510.0 387 67.2
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 4.4e-142 508.8 478 53.6
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 5.3e-140 501.9 519 51.6
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 9.1e-140 501.1 470 53.4
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 9.1e-140 501.1 514 51.6
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 2.7e-139 499.6 470 56.0
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.8e-138 495.7 475 54.7
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.8e-138 495.7 515 51.7
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 8.5e-138 494.6 434 59.9
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.5e-137 493.0 388 64.4
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 8.8e-135 484.6 479 52.4
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.5e-131 472.6 467 53.7
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.0e-130 471.1 463 52.9
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 1.2e-128 464.2 508 51.2
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.4e-127 460.7 511 48.3
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 1.3e-125 454.1 478 51.5
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.5e-121 439.9 480 49.0
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.3e-117 427.6 477 48.8
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 6.0e-115 418.7 331 61.9
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.6e-112 410.6 341 57.5
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 2.3e-106 390.2 475 44.8
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.6e-104 384.0 288 64.6
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.6e-104 382.9 291 64.6
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 4.7e-104 382.5 276 67.4
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 2.3e-103 380.2 309 62.8
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 3.1e-95 353.2 257 67.3
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.8e-93 346.3 293 61.4
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 3.0e-90 336.7 328 54.6
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 9.6e-89 331.6 283 56.9
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 4.7e-88 329.3 484 36.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.3e-72 278.1 511 34.4
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.2e-70 271.6 187 69.5
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.5e-70 271.2 191 68.6
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.9e-69 266.9 206 61.2
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 6.4e-69 265.8 186 69.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.2e-67 261.5 226 58.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.5e-65 253.8 156 73.7
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.5e-62 244.6 168 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 1.3e-61 241.5 465 34.6
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 9.0e-55 218.8 161 62.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-39 165.6 365 32.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.0e-33 147.9 130 53.8
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 3.5e-30 137.1 191 39.3
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.2e-25 122.1 140 45.7
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 1.4e-23 115.2 82 67.1
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 8.5e-21 105.9 91 56.0
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 4.2e-20 103.6 90 54.4
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 4.0e-18 97.1 360 25.8
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.1e-15 89.0 99 46.5
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.8e-15 88.2 294 25.5
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 3.5e-14 84.0 151 38.4
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 1.7e-13 81.6 53 67.9
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 1.5e-12 78.6 79 57.0
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 3.6e-11 73.9 56 58.9
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 8.3e-08 62.8 87 40.2
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 7.0e-07 59.7 72 38.9
QL01p005785 Quercus lobata HOM05D148482 ORTHO05D337006 9.2e-07 59.3 34 85.3


User provided reference genes

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