Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.5e-136 490.0 255 100.0
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 5.6e-115 418.3 253 85.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.5e-112 410.2 256 82.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 4.4e-112 408.7 249 82.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 5.8e-112 408.3 255 82.0
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 4.9e-111 405.2 265 80.4
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 4.9e-111 405.2 251 81.7
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 4.9e-111 405.2 252 81.7
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 8.4e-111 404.4 249 81.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.1e-110 404.1 260 80.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-110 403.7 249 81.5
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.9e-110 403.3 255 81.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.2e-110 402.5 245 84.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.5e-109 399.1 279 77.4
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 4.6e-109 398.7 258 79.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 7.8e-109 397.9 257 79.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.7e-108 396.7 259 77.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 3.9e-108 395.6 258 79.1
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.7e-108 394.4 258 79.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 8.7e-108 394.4 252 80.6
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.1e-107 394.0 259 77.6
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.1e-107 394.0 256 80.5
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.5e-107 392.9 256 78.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.3e-107 392.5 258 79.5
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 4.3e-107 392.1 256 78.9
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 5.6e-107 391.7 257 77.4
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 5.6e-107 391.7 261 78.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 5.6e-107 391.7 254 78.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 9.6e-107 391.0 258 78.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.6e-106 390.2 258 76.7
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.1e-106 389.8 255 78.4
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.1e-105 387.5 257 76.7
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.4e-105 387.1 251 78.1
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.8e-105 386.7 252 78.2
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.8e-105 386.7 252 77.8
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.4e-105 386.3 256 78.1
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 5.3e-105 385.2 259 76.8
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 9.0e-105 384.4 254 76.0
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.2e-104 384.0 260 76.5
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.2e-104 384.0 260 76.5
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.2e-104 384.0 255 76.9
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.2e-104 384.0 258 76.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.2e-104 384.0 254 76.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.6e-104 382.9 252 77.4
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 7.6e-104 381.3 255 76.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.9e-104 380.9 259 75.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.2e-103 379.8 256 76.6
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 2.2e-103 379.8 259 76.4
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.2e-103 379.8 252 77.0
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.9e-103 379.4 255 75.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.1e-102 377.5 252 76.6
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.9e-102 376.7 255 76.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 4.2e-102 375.6 249 75.1
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 5.4e-102 375.2 249 76.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 5.4e-102 375.2 259 74.1
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 7.1e-102 374.8 255 72.9
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.2e-101 374.0 258 73.6
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.6e-101 373.6 257 74.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 2.1e-101 373.2 254 76.0
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.7e-101 372.9 255 75.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.7e-101 372.9 258 73.3
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.5e-101 372.5 245 75.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.6e-101 372.1 255 74.1
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-100 370.5 251 73.3
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.3e-100 369.8 259 72.6
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 3.9e-100 369.0 265 70.6
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 5.1e-100 368.6 252 72.6
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 5.1e-100 368.6 252 72.6
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.1e-99 367.5 264 70.5
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.5e-99 367.1 252 72.6
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 3.3e-99 365.9 251 74.9
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 9.6e-99 364.4 265 70.6
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.3e-98 364.0 255 72.9
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 3.6e-98 362.5 242 73.6
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.2e-98 361.7 249 72.7
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 8.1e-98 361.3 243 73.7
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.4e-97 360.5 255 71.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.8e-97 360.1 242 73.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 2.4e-97 359.8 251 72.5
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 2.4e-97 359.8 255 71.0
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.1e-97 359.4 270 70.4
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.0e-97 359.0 253 70.8
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.0e-97 359.0 255 72.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.2e-96 357.5 259 73.4
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 9.9e-96 354.4 243 72.8
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.7e-95 353.6 251 72.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.4e-95 351.3 256 70.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.1e-94 350.9 256 70.7
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.4e-94 350.5 252 73.0
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.4e-94 350.5 325 60.6
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.4e-94 349.7 257 70.8
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.1e-91 340.9 247 66.8
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 6.9e-89 331.6 250 66.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 3.4e-88 329.3 250 66.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 4.5e-88 328.9 249 66.3
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.0e-87 327.8 257 65.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.2e-87 326.6 249 65.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 9.0e-81 304.7 211 73.5
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.6e-80 303.1 247 65.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.5e-75 287.3 198 72.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 9.0e-73 278.1 253 60.1
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.9e-71 273.1 256 53.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.9e-71 273.1 250 59.2
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 5.1e-68 262.3 250 52.8
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.1e-67 261.2 258 53.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.6e-61 240.7 165 74.5
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-58 229.9 162 73.5
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.1e-57 226.1 142 77.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.8e-55 219.5 246 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 5.0e-55 219.2 194 56.2
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.5e-54 215.7 187 63.6
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.5e-47 191.8 169 62.1
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.8e-42 176.0 166 58.4
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 6.3e-42 175.6 163 60.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 6.3e-42 175.6 141 64.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.8e-39 166.4 163 59.5
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.7e-37 160.2 179 52.5
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.5e-35 154.5 109 70.6
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 5.7e-35 152.5 109 70.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.2e-34 150.6 104 69.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.0e-33 145.6 102 75.5
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.9e-32 142.5 106 70.8
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.9e-30 137.5 94 73.4
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 7.2e-30 135.6 75 88.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.0e-28 129.8 115 58.3
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.9e-26 122.9 74 75.7
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 5.4e-25 119.4 71 80.3
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 2.0e-24 117.5 90 67.8
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.9e-24 115.9 200 34.5
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-22 111.7 72 75.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.3e-22 109.8 85 68.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.2e-20 102.8 80 58.8
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 8.3e-18 95.5 228 30.7
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.2e-17 93.6 50 90.0
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 7.0e-17 92.4 99 58.6
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 9.2e-17 92.0 56 80.4
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.2e-16 91.7 56 82.1
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.0e-16 90.9 181 33.1
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.3e-14 83.6 91 54.9
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.6e-13 81.3 147 36.1
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.8e-12 75.9 128 36.7
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.2e-11 75.1 69 60.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 9.8e-11 72.0 138 32.6
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 5.4e-09 66.2 47 70.2
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 7.1e-09 65.9 39 71.8
COL.COLO4_28032 Corchorus olitorius HOM05D001335 ORTHO05D001184 9.5e-06 55.5 51 56.9


User provided reference genes

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