Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.0e-50 203.8 160 100.0
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 4.6e-27 125.2 158 75.9
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.9e-25 119.8 159 70.4
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-19 99.4 66 83.3
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-19 99.4 66 83.3
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.3e-16 90.5 64 64.1
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.6e-16 90.1 68 69.1
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 1.6e-16 90.1 68 70.6
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 2.8e-16 89.4 67 73.1
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.8e-16 89.4 166 47.0
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 3.7e-16 89.0 68 69.1
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 3.7e-16 89.0 68 69.1
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 6.2e-16 88.2 67 74.6
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 8.2e-16 87.8 68 67.6
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.1e-15 85.9 63 61.9
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.2e-14 84.0 67 70.1
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.0e-13 80.9 60 66.7
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.7e-13 80.1 166 48.8
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.7e-13 80.1 68 63.2
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-13 79.7 66 68.2
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.2e-13 79.7 66 68.2
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.9e-13 79.3 64 65.6
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 3.8e-13 79.0 70 57.1
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 4.9e-13 78.6 65 60.0
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 6.5e-13 78.2 59 67.8
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 8.4e-13 77.8 158 39.9
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-12 77.4 154 54.5
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.1e-12 77.4 71 57.7
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.4e-12 77.0 56 67.9
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.5e-12 76.3 56 66.1
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 3.2e-12 75.9 71 57.7
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.2e-12 75.5 71 53.5
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 4.2e-12 75.5 67 52.2
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 5.5e-12 75.1 71 57.7
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 5.5e-12 75.1 97 51.5
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 5.5e-12 75.1 71 53.5
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 5.5e-12 75.1 68 58.8
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 7.1e-12 74.7 69 58.0
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 7.1e-12 74.7 55 63.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 7.1e-12 74.7 71 57.7
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 9.3e-12 74.3 51 70.6
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 9.3e-12 74.3 70 55.7
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 9.3e-12 74.3 60 63.3
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.6e-11 73.6 50 66.0
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.6e-11 73.6 71 59.2
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.1e-11 73.2 64 60.9
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 2.1e-11 73.2 64 60.9
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.1e-11 73.2 68 60.3
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.7e-11 72.8 68 52.9
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 2.7e-11 72.8 66 50.0
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 3.5e-11 72.4 65 58.5
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 3.5e-11 72.4 69 55.1
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 3.5e-11 72.4 71 53.5
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.5e-11 72.4 68 58.8
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 3.5e-11 72.4 59 59.3
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 3.5e-11 72.4 62 59.7
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.6e-11 72.0 163 36.2
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 6.1e-11 71.6 65 56.9
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 6.1e-11 71.6 65 56.9
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 6.1e-11 71.6 65 56.9
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 6.1e-11 71.6 65 56.9
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 6.1e-11 71.6 65 56.9
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 6.1e-11 71.6 60 61.7
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 6.1e-11 71.6 70 52.9
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.1e-11 71.6 162 36.4
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 6.1e-11 71.6 54 59.3
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 6.1e-11 71.6 60 60.0
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 7.9e-11 71.2 68 55.9
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 7.9e-11 71.2 70 55.7
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.0e-10 70.9 63 58.7
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.8e-10 70.1 57 57.9
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 2.3e-10 69.7 70 52.9
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.3e-10 69.7 50 68.0
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.3e-10 69.7 50 64.0
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.3e-10 69.7 50 64.0
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 3.0e-10 69.3 98 40.8
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 3.0e-10 69.3 53 60.4
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 3.9e-10 68.9 59 54.2
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 3.9e-10 68.9 50 68.0
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.9e-10 68.9 66 54.5
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.9e-10 68.9 58 56.9
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 5.1e-10 68.6 67 53.7
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 6.7e-10 68.2 60 58.3
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 6.7e-10 68.2 59 59.3
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 8.7e-10 67.8 70 52.9
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.1e-09 67.4 56 57.1
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 1.5e-09 67.0 67 56.7
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.9e-09 66.6 71 56.3
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.9e-09 66.6 71 56.3
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 2.5e-09 66.2 58 56.9
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.3e-09 65.9 56 55.4
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 3.3e-09 65.9 70 48.6
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 3.3e-09 65.9 47 66.0
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 3.3e-09 65.9 66 57.6
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 3.3e-09 65.9 53 60.4
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 3.3e-09 65.9 59 62.7
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 4.3e-09 65.5 59 57.6
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 5.7e-09 65.1 72 50.0
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 7.4e-09 64.7 42 71.4
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.3e-08 63.9 69 56.5
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.6e-08 63.5 50 62.0
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.6e-08 63.5 64 50.0
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 2.8e-08 62.8 64 51.6
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 8.2e-08 61.2 70 52.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 70 48.6
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 1.1e-07 60.8 45 60.0
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.4e-07 60.5 57 54.4
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-07 60.5 68 44.1
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 2.4e-07 59.7 46 58.7
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 2.4e-07 59.7 43 65.1
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.4e-07 59.7 40 72.5
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 2.4e-07 59.7 46 58.7
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 3.1e-07 59.3 65 52.3
MSTRG.17805 Avicennia marina HOM05D004188 ORTHO05D004445 4.1e-07 58.9 36 72.2
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.3e-07 58.5 63 52.4
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 5.3e-07 58.5 59 50.8
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.9e-07 58.2 55 49.1
Zm00001eb064740 Zea mays HOM05D004188 ORTHO05D004445 9.0e-07 57.8 65 52.3
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 1.2e-06 57.4 62 45.2
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 1.2e-06 57.4 68 45.6
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.5e-06 57.0 43 67.4
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 1.5e-06 57.0 65 44.6
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 2.0e-06 56.6 56 58.9
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 4.5e-06 55.5 59 47.5
DCAR_006440 Daucus carota HOM05D004188 ORTHO05D004445 4.5e-06 55.5 48 54.2
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 7.7e-06 54.7 56 58.9
Cpa.g.sc216.12 Carica papaya HOM05D004188 ORTHO05D004445 7.7e-06 54.7 34 67.6
Hma1.2p1_0058F.1_g032570 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 7.7e-06 54.7 35 68.6
Nitab4.5_0007218g0010 Nicotiana tabacum HOM05D004188 ORTHO05D004445 7.7e-06 54.7 32 75.0
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 1.0e-05 54.3 58 51.7
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 1.0e-05 54.3 54 59.3
Os03g0852400 Oryza sativa ssp. japonica HOM05D004188 ORTHO05D004445 1.0e-05 54.3 61 47.5
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 1.0e-05 54.3 40 62.5


User provided reference genes

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