Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 0.0e+00 1238.8 756 100.0
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 2.8e-252 875.5 763 78.4
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.2e-211 738.8 760 57.2
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.2e-211 738.8 760 57.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 9.3e-211 737.6 772 57.1
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 7.9e-202 708.0 727 56.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 6.9e-198 694.9 726 61.4
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.1e-190 671.0 762 58.5
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 6.7e-185 651.7 796 50.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.0e-169 601.3 784 54.0
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.0e-165 587.0 789 51.3
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.7e-138 496.1 740 43.2
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 5.2e-137 492.7 772 41.6
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 2.0e-136 490.7 769 41.7
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 2.2e-135 487.3 739 41.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.1e-134 485.0 769 42.1
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.0e-133 480.7 740 41.4
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 4.6e-133 479.6 735 42.7
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 1.7e-132 477.6 762 41.2
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.0e-132 476.1 771 40.7
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 5.0e-132 476.1 783 41.0
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.5e-131 473.8 738 42.1
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 4.7e-130 469.5 676 43.0
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 1.4e-129 468.0 775 40.0
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 5.2e-129 466.1 770 40.9
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.2e-128 464.9 742 41.5
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 5.8e-128 462.6 349 73.1
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.7e-127 459.9 791 40.2
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.1e-126 458.4 685 42.6
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.6e-125 454.5 704 42.3
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 6.0e-125 452.6 712 42.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 8.6e-124 448.7 732 43.4
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 5.6e-123 446.0 760 41.2
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 9.5e-123 445.3 709 39.9
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.7e-122 443.0 712 42.3
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 8.1e-122 442.2 713 42.1
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.8e-121 441.0 705 42.3
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 5.2e-121 439.5 760 40.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 5.2e-121 439.5 762 38.6
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.8e-121 439.1 728 39.3
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.9e-121 438.7 712 45.5
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 8.9e-121 438.7 694 41.8
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 4.4e-120 436.4 775 38.8
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.9e-118 431.0 733 46.2
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.4e-118 430.6 736 39.7
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 4.1e-118 429.9 736 39.5
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 5.4e-118 429.5 755 39.6
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 5.4e-118 429.5 436 62.6
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.6e-117 427.9 759 40.1
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.7e-117 427.2 707 40.0
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.7e-117 427.2 724 39.2
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.0e-116 425.2 759 39.4
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.3e-116 424.9 762 42.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 3.9e-116 423.3 750 39.3
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 5.1e-116 422.9 763 38.9
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 8.6e-116 422.2 737 40.2
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.5e-115 421.4 689 45.0
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.9e-115 421.0 766 38.3
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 4.7e-114 416.4 769 40.6
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 8.1e-114 415.6 755 41.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 8.1e-114 415.6 768 44.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.1e-113 415.2 789 38.5
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.9e-111 407.1 690 40.6
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 8.4e-111 405.6 855 35.7
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.1e-110 405.2 702 39.0
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.4e-110 404.8 744 38.4
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.4e-110 404.1 734 39.9
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 7.1e-110 402.5 758 38.0
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 4.6e-109 399.8 714 38.8
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 4.6e-109 399.8 696 54.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 6.0e-109 399.4 769 39.0
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.9e-108 396.7 718 39.0
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 6.6e-108 396.0 793 37.5
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 6.6e-108 396.0 717 52.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 8.6e-108 395.6 751 38.6
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.1e-106 391.0 752 38.6
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-105 388.3 716 39.1
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 6.8e-105 386.0 709 38.4
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 8.9e-105 385.6 784 37.8
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 8.9e-105 385.6 715 38.3
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.5e-104 384.8 778 35.6
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 9.9e-104 382.1 808 37.3
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.2e-103 380.9 693 38.5
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.9e-103 380.6 688 38.1
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 3.2e-102 377.1 743 44.5
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 4.2e-102 376.7 788 46.3
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.0e-100 372.1 790 36.6
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.9e-100 370.2 759 35.3
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.3e-98 365.2 709 38.8
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.1e-97 360.5 779 34.8
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 5.8e-96 356.3 746 35.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.1e-94 352.1 754 38.1
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 5.4e-94 349.7 771 35.0
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.2e-93 348.6 591 41.5
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.6e-90 338.2 718 40.3
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.8e-90 336.7 747 48.5
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.6e-88 330.9 594 38.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.9e-86 324.7 677 33.8
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 3.0e-84 317.4 685 35.0
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.3e-83 313.9 593 39.6
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 5.8e-80 303.1 289 57.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 7.6e-80 302.8 578 40.0
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.9e-73 279.6 190 67.9
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-70 272.3 232 59.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.2e-64 252.3 207 66.2
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.8e-63 247.3 754 35.7
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.0e-60 239.2 251 53.0
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.3e-58 232.3 691 33.6
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 7.2e-54 216.5 199 57.3
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-49 201.8 664 27.3
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-47 195.3 139 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 2.2e-47 194.9 274 41.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.2e-47 194.9 664 27.3
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 7.2e-46 189.9 229 48.9
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.3e-42 179.1 228 48.7
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-40 172.6 228 44.7
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-40 171.8 216 44.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 9.8e-35 152.9 196 43.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 9.8e-35 152.9 196 43.4
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.7e-34 152.1 199 41.7
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 4.1e-33 147.5 149 54.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 7.5e-27 126.7 171 41.5
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.3e-26 125.9 234 35.5
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 3.1e-25 121.3 159 44.7
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 6.6e-23 113.6 100 59.0
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.5e-19 102.4 141 41.1
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.3e-18 99.4 80 61.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 7.0e-17 93.6 126 40.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.0e-15 89.7 137 41.6
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.7e-15 89.0 61 65.6
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 6.6e-15 87.0 104 42.3
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.4e-12 79.3 160 36.9
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 6.8e-12 77.0 88 43.2
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.5e-11 75.9 94 53.2
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.2e-10 72.0 160 27.5
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.4e-10 70.5 67 50.7
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.2e-09 68.2 49 63.3
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 3.5e-08 64.7 122 32.0
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-08 64.7 56 62.5
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 4.6e-08 64.3 166 30.1
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 4.6e-08 64.3 228 25.4
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 4.6e-08 64.3 257 25.3
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 6.0e-08 63.9 255 25.9
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 6.0e-08 63.9 147 29.9
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 6.0e-08 63.9 287 26.1
Medtr1g054730 Medicago truncatula HOM05D000559 ORTHO05D000596 1.0e-07 63.2 145 33.1
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-07 62.4 143 32.2
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.7e-07 62.4 79 38.0
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.7e-07 62.4 208 30.8
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.0e-07 61.6 164 32.3
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 3.9e-07 61.2 259 25.5
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 8.6e-07 60.1 100 40.0
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.1e-06 59.7 135 34.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.5e-06 59.3 118 34.7
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.5e-06 59.3 181 28.7
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.9e-06 58.9 136 32.4
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-06 58.9 69 42.0
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.3e-06 57.8 162 33.3


User provided reference genes

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