Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 0.0e+00 1862.8 1180 100.0
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 9.8e-284 980.7 1357 52.7
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 4.9e-283 978.4 1217 56.5
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 1.6e-185 654.4 1195 42.8
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.3e-166 591.7 1287 43.6
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.8e-164 582.4 1243 44.7
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.6e-148 531.6 1289 43.5
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.4e-144 517.7 1231 41.2
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 2.4e-141 507.7 1318 39.7
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 1.7e-131 474.9 1403 38.3
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 4.5e-111 407.1 1326 30.8
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.3e-107 395.6 1103 32.6
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.8e-96 358.6 1218 31.0
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 8.2e-89 333.2 1131 32.9
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.9e-86 324.7 1139 33.2
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 9.4e-85 319.7 1363 31.4
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.6e-50 205.3 925 26.5
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.8e-50 204.1 1189 24.8
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.4e-48 199.5 1189 25.8
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.0e-47 195.7 1272 24.8
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 3.5e-47 194.9 1187 25.8
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 3.5e-47 194.9 1190 25.5
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 7.8e-47 193.7 923 26.8
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.2e-44 186.4 1267 23.6
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 6.2e-44 184.1 909 25.7
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.2e-42 179.9 1188 25.8
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.6e-42 178.7 1192 24.4
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.4e-42 177.9 970 24.8
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 6.4e-41 174.1 1220 23.7
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 9.2e-40 170.2 964 23.5
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 1.2e-39 169.9 1321 23.2
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 7.8e-39 167.2 1269 24.0
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 6.6e-38 164.1 479 31.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.2e-36 159.8 1241 25.1
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.5e-34 152.9 1299 24.3
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.0e-34 152.5 957 22.8
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.4e-32 144.4 866 27.4
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 5.4e-32 144.4 1215 26.3
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 7.8e-31 140.6 637 31.9
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 5.6e-29 134.4 921 24.8
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.6e-29 133.7 530 26.2
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.8e-28 132.1 1250 23.2
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.7e-28 131.3 863 27.0
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.1e-27 128.6 1257 23.2
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 1.5e-26 126.3 891 22.3
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 9.9e-26 123.6 531 33.0
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.7e-25 122.9 502 27.3
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.9e-25 122.1 508 27.0
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.4e-24 119.8 395 26.6
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 3.2e-24 118.6 366 27.0
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 4.6e-23 114.8 474 25.5
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.0e-22 113.6 363 27.0
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.0e-22 113.6 354 25.7
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 5.1e-22 111.3 535 27.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.6e-22 110.9 577 29.1
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.7e-22 110.5 355 27.3
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.5e-21 109.8 398 26.1
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.9e-21 109.4 362 27.3
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.9e-21 109.4 515 26.8
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 4.3e-21 108.2 380 26.6
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 7.3e-21 107.5 1076 22.1
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 2.1e-20 105.9 207 33.8
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 3.6e-20 105.1 514 27.4
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.6e-20 105.1 962 25.2
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 4.8e-20 104.8 396 25.8
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 8.1e-20 104.0 466 26.8
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.4e-19 102.4 391 36.8
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.4e-19 102.4 941 24.0
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.4e-19 102.4 301 29.9
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 3.1e-19 102.1 326 33.1
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 6.9e-19 100.9 667 30.7
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.2e-18 100.1 227 36.6
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.2e-18 100.1 227 36.6
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 4.5e-18 98.2 546 26.7
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.6e-18 97.4 753 23.1
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 2.2e-17 95.9 1040 21.3
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 3.8e-17 95.1 408 26.7
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 6.4e-17 94.4 535 24.3
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 6.4e-17 94.4 586 23.7
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 6.4e-17 94.4 617 22.2
Glyma.01G217800 Glycine max HOM05D003520 ORTHO05D003332 1.9e-16 92.8 206 38.8
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 3.2e-16 92.0 545 22.8
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.2e-16 92.0 537 24.6
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.2e-16 91.7 436 24.1
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 1.2e-15 90.1 328 28.7
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.7e-15 89.0 505 22.6
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 7.9e-15 87.4 317 27.4
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.8e-14 86.3 380 23.4
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.0e-14 85.5 1240 20.7
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 3.9e-14 85.1 126 42.9
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 1.5e-13 83.2 236 31.8
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 2.5e-13 82.4 235 29.4
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 4.3e-13 81.6 374 27.3
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 9.6e-13 80.5 80 45.0
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 9.6e-13 80.5 78 52.6
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.6e-13 80.5 81 49.4
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-12 80.1 244 32.0
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 2.1e-12 79.3 345 25.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.7e-12 78.6 281 30.6
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 3.7e-12 78.6 300 29.7
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 6.2e-12 77.8 119 37.0
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 6.2e-12 77.8 246 26.8
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 8.1e-12 77.4 592 21.8
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 8.1e-12 77.4 550 24.4
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 8.1e-12 77.4 187 36.9
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 1.4e-11 76.6 378 31.7
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.4e-11 76.6 246 26.8
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.1e-11 75.5 308 27.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 4.0e-11 75.1 503 22.1
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.0e-11 75.1 105 44.8
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.3e-11 74.7 479 29.4
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 5.3e-11 74.7 214 34.6
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 5.3e-11 74.7 232 29.7
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 9.0e-11 73.9 573 24.3
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 9.0e-11 73.9 573 24.3
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.5e-10 73.2 535 20.9
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 1.5e-10 73.2 248 30.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 2.0e-10 72.8 93 44.1
Os04g0613800 Oryza sativa ssp. japonica HOM05D023145 ORTHO05D003332 2.6e-10 72.4 344 27.3
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.5e-10 71.6 59 52.5
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 5.8e-10 71.2 405 36.8
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 5.8e-10 71.2 229 27.1
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 9.9e-10 70.5 124 38.7
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 4.9e-09 68.2 589 23.8
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 4.9e-09 68.2 370 24.6
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 6.4e-09 67.8 65 53.8
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 8.4e-09 67.4 60 53.3
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.4e-08 66.6 199 28.6
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.4e-08 66.6 72 48.6
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 1.9e-08 66.2 74 48.6
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.9e-08 66.2 131 33.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.9e-08 66.2 244 29.5
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 3.2e-08 65.5 362 24.9
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 4.2e-08 65.1 353 24.9
Actinidia34100 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.5e-08 64.7 303 25.1
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.5e-08 64.7 273 29.3
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 7.1e-08 64.3 272 24.6
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.6e-07 63.2 91 35.2
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.7e-07 62.4 277 27.8
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.7e-07 62.4 72 43.1
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 2.7e-07 62.4 49 59.2
ECA238G0250 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.5e-07 62.0 53 50.9
ECA238G4163 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.5e-07 62.0 53 50.9
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 3.5e-07 62.0 125 33.6
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.5e-07 62.0 269 23.4
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.6e-07 61.6 88 40.9
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 6.0e-07 61.2 65 43.1
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 6.0e-07 61.2 60 46.7
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.9e-07 60.8 49 49.0
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 7.9e-07 60.8 58 43.1
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 7.9e-07 60.8 287 24.4
ECA238G0526 Erigeron canadensis HOM05D002097 ORTHO05D003332 7.9e-07 60.8 53 50.9
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 7.9e-07 60.8 57 49.1
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.0e-06 60.5 53 52.8
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.0e-06 60.5 65 43.1
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.0e-06 60.5 185 28.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 1.3e-06 60.1 79 44.3
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.8e-06 59.7 58 46.6
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.8e-06 59.7 269 23.0
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 1.8e-06 59.7 216 26.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.3e-06 59.3 80 41.2
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.3e-06 59.3 55 52.7
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 2.3e-06 59.3 65 43.1
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 3.0e-06 58.9 49 53.1
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 3.0e-06 58.9 56 51.8
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.9e-06 58.5 342 24.3
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.9e-06 58.5 156 29.5
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 5.1e-06 58.2 73 39.7
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 5.1e-06 58.2 356 23.6
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 5.1e-06 58.2 170 27.1
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 5.1e-06 58.2 53 45.3
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 5.1e-06 58.2 58 48.3
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.7e-06 57.8 75 41.3
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 8.7e-06 57.4 59 45.8
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 8.7e-06 57.4 114 36.8


User provided reference genes

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