Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 3534.2 1864 100.0
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 3197.9 1864 90.8
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 3187.9 1866 90.8
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 3183.3 1865 90.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 3040.8 1874 86.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 3038.8 1869 86.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3015.7 1874 83.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 3014.6 1874 84.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2996.5 1874 84.4
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2988.0 1874 84.1
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2899.8 1881 81.8
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2898.6 1893 81.5
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2891.7 1917 80.7
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2860.5 1759 87.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2833.5 1878 80.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2607.8 1906 73.8
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2600.5 1897 73.5
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2555.8 1897 72.7
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2520.7 1893 71.2
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2510.3 1901 71.4
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2509.6 1896 71.6
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2505.3 1900 71.5
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2504.6 1892 71.4
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2492.2 1900 70.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2485.3 1893 71.5
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2483.0 1903 70.4
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2473.7 1880 70.5
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2464.5 1892 71.1
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2464.1 1905 69.6
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2454.1 1905 71.0
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2445.2 1918 67.4
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2436.8 1896 70.6
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2417.1 2108 63.9
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2409.4 1890 68.7
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2380.1 1897 68.3
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2375.5 1984 67.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2375.1 1894 68.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2368.2 1956 66.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2367.0 1732 74.0
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2366.3 1890 69.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2358.2 1896 67.4
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2327.4 2096 64.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2312.3 1933 67.3
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2304.2 1896 67.7
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2296.5 1888 65.8
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2289.6 1893 66.2
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2288.1 1900 65.6
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2282.3 2223 58.7
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1887 65.7
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1901 66.6
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2271.9 1901 66.5
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2267.3 1712 71.1
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2257.3 1908 66.6
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2256.5 1895 66.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2251.5 1910 66.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2242.6 1899 65.9
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2241.8 1855 66.1
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2225.7 1872 65.8
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2221.0 1892 64.6
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2218.7 1894 63.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2204.5 1911 65.4
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2196.0 1889 65.1
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2195.6 1893 63.5
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2190.6 1909 65.3
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2183.7 1915 65.0
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2179.4 1857 65.2
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2172.9 1739 68.3
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2164.0 1915 64.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2160.6 1883 64.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2158.6 1888 64.9
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2152.5 1883 64.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2151.7 1884 63.7
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2146.3 1918 62.9
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2134.0 1885 63.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2132.8 1791 64.9
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2114.0 1897 64.2
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2110.9 1878 63.5
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2109.7 1985 61.2
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2109.3 1885 63.2
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2108.2 1885 63.2
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2096.2 1853 63.7
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2091.6 1885 62.9
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2091.2 1982 59.3
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2074.3 1932 61.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2067.0 1881 61.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2018.8 1890 61.5
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1955.6 1355 73.6
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1865.5 1517 67.8
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1850.5 1506 67.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1815.4 1871 55.0
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1810.0 1988 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1751.5 1987 53.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1666.0 1749 53.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1632.8 1883 51.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1570.4 1885 51.7
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1444.1 937 78.1
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1431.0 1211 67.3
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1417.5 1269 63.8
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1384.0 1293 62.3
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1370.5 1081 68.9
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1317.0 1481 54.2
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1275.0 1220 60.7
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1181.4 851 70.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1143.6 940 65.7
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1133.2 1100 62.5
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 3.1e-300 1036.2 1284 46.0
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.2e-290 1003.4 1135 55.2
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 4.1e-284 982.6 674 74.8
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 5.2e-279 965.7 689 74.5
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 9.8e-246 855.1 874 61.0
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.9e-221 773.1 962 51.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.4e-220 771.5 1320 37.3
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 6.2e-216 756.1 1122 43.7
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 9.3e-204 715.7 448 82.6
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 5.3e-167 593.6 374 78.6
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 4.1e-151 540.8 1334 31.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.6e-149 533.1 366 73.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.9e-140 505.4 370 68.4
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-136 492.7 367 68.9
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.9e-108 399.1 497 48.9
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.3e-104 386.3 293 66.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.0e-90 337.0 299 60.9
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.0e-90 337.0 239 73.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.3e-88 333.2 214 75.2
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.4e-88 330.5 566 43.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 3.2e-87 328.6 522 49.8
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.3e-85 322.4 198 80.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.0e-85 322.0 262 67.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 4.8e-83 314.7 170 93.5
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 2.0e-81 309.3 1597 25.1
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 4.9e-80 304.7 1121 26.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 1.1e-68 266.9 264 56.1
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 2.4e-58 232.6 224 60.3
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.2e-53 214.9 190 59.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-52 213.4 243 52.7
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.7e-51 208.8 500 33.2
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.8e-50 206.5 176 63.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.7e-49 201.1 235 51.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 1.5e-47 196.8 163 60.7
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.6e-46 192.2 278 47.8
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.2e-43 183.0 221 48.9
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.1e-42 177.6 404 39.1
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 3.6e-38 165.6 106 72.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.4e-36 159.1 89 82.0
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.1e-30 138.3 121 61.2
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 4.4e-28 132.1 143 58.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 2.8e-27 129.4 105 70.5
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 8.3e-27 127.9 75 88.0
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 2.3e-24 119.8 69 88.4
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 3.8e-24 119.0 78 79.5
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 9.5e-23 114.4 98 65.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 3.6e-22 112.5 87 62.1
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-20 106.7 75 73.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 4.4e-20 105.5 61 83.6
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 9.8e-20 104.4 124 48.4
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 8.3e-19 101.3 80 70.0
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.4e-18 100.5 82 58.5
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 5.4e-18 98.6 58 86.2
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 5.4e-18 98.6 58 86.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 4.6e-17 95.5 58 84.5
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 7.8e-17 94.7 88 56.8
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 8.6e-16 91.3 128 46.9
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.9e-15 90.1 51 96.1
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-14 86.7 41 97.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.6e-14 85.9 73 61.6
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 6.2e-14 85.1 131 44.3
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.8e-13 81.6 78 61.5
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 8.9e-13 81.3 82 54.9
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 9.8e-12 77.8 36 94.4
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 9.2e-10 71.2 95 45.3
FAN07G2130 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.1e-09 70.1 110 51.8
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.7e-08 67.0 111 36.9
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.3e-07 62.8 105 41.9
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 5.6e-07 62.0 59 57.6


User provided reference genes

Program Settings