Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g292600 Pisum sativum HOM05D003197 ORTHO05D003769 6.7e-57 223.8 113 100.0
Psat7g002680 Pisum sativum HOM05D003197 ORTHO05D320269 2.8e-10 68.9 60 63.3
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 4.0e-09 65.1 103 44.7
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 6.8e-09 64.3 103 44.7
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.0e-08 62.8 103 44.7
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 2.6e-08 62.4 103 43.7
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 2.6e-08 62.4 103 43.7
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 2.6e-08 62.4 103 43.7
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 3.4e-08 62.0 103 42.7
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 3.4e-08 62.0 103 42.7
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 4.4e-08 61.6 103 43.7
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 4.4e-08 61.6 103 43.7
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 4.4e-08 61.6 107 43.0
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 5.8e-08 61.2 103 42.7
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 5.8e-08 61.2 103 42.7
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 5.8e-08 61.2 103 43.7
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 5.8e-08 61.2 107 43.0
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 7.5e-08 60.8 103 42.7
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 7.5e-08 60.8 103 42.7
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 7.5e-08 60.8 103 42.7
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 7.5e-08 60.8 103 42.7
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 9.9e-08 60.5 101 42.6
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 41.7
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 41.7
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 41.7
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 41.7
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 41.7
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 9.9e-08 60.5 103 42.7
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 1.3e-07 60.1 103 40.8
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 1.3e-07 60.1 103 40.8
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 1.3e-07 60.1 103 41.7
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 1.3e-07 60.1 103 42.7
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 1.3e-07 60.1 103 41.7
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 41.7
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 40.8
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 41.7
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 41.7
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 41.7
Solyc06g009830.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 1.7e-07 59.7 103 41.7
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 42.7
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 41.7
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 41.7
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 41.7
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 42.7
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 42.7
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 42.7
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 41.7
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 2.2e-07 59.3 103 40.8
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 42.7
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 2.9e-07 58.9 101 41.6
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 40.8
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 42.7
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 2.9e-07 58.9 103 41.7
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 41.7
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 41.7
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 41.7
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 42.7
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 41.7
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 3.7e-07 58.5 103 41.7
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 4.9e-07 58.2 103 39.8
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 4.9e-07 58.2 103 41.7
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 4.9e-07 58.2 103 40.8
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 6.4e-07 57.8 103 40.8
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 6.4e-07 57.8 103 39.8
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 6.4e-07 57.8 101 40.6
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 6.4e-07 57.8 101 39.6
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 6.4e-07 57.8 101 40.6
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 6.4e-07 57.8 101 40.6
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.3e-07 57.4 103 40.8
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.3e-07 57.4 103 40.8
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 8.3e-07 57.4 103 39.8
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 8.3e-07 57.4 103 41.7
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.1e-06 57.0 103 40.8
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 1.4e-06 56.6 103 39.8
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.4e-06 56.6 103 40.8
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.4e-06 56.6 103 40.8
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 1.4e-06 56.6 103 39.8
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 1.4e-06 56.6 103 40.8
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 1.9e-06 56.2 101 39.6
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 1.9e-06 56.2 103 39.8
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 1.9e-06 56.2 94 41.5
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 1.9e-06 56.2 103 39.8
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.9e-06 56.2 103 38.8
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 1.9e-06 56.2 103 39.8
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 40.8
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 40.8
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 39.8
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 38.8
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 39.8
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 40.8
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 38.8
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 39.8
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 2.4e-06 55.8 103 39.8
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 3.2e-06 55.5 103 39.8
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 4.1e-06 55.1 101 40.6
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 4.1e-06 55.1 101 40.6
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 4.1e-06 55.1 103 39.8
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 5.4e-06 54.7 101 38.6
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 5.4e-06 54.7 101 38.6
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 7.1e-06 54.3 101 40.6
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 9.2e-06 53.9 101 40.6


User provided reference genes

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