Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 0.0e+00 1218.0 745 100.0
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 0.0e+00 1129.0 745 93.3
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 0.0e+00 1108.2 633 93.5
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 0.0e+00 1100.5 746 91.8
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.9e-301 1038.9 746 84.2
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.6e-287 992.6 747 81.8
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 1.9e-285 985.7 748 81.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 3.1e-283 978.4 755 82.6
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 7.6e-282 973.8 755 79.6
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 9.3e-280 966.8 746 80.0
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 1.6e-279 966.1 747 80.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 3.6e-276 954.9 775 78.2
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 2.9e-273 945.3 764 77.2
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 1.4e-248 863.2 740 73.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 3.2e-248 862.1 758 73.0
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.1e-247 859.4 750 73.3
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.5e-245 853.2 752 72.6
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.3e-245 851.7 751 74.2
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.3e-245 851.7 751 74.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.7e-245 850.5 748 73.7
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-244 849.0 748 73.5
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.8e-244 849.0 753 72.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.2e-244 847.4 749 73.6
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-243 846.3 749 73.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.0e-242 842.8 756 72.1
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 4.6e-239 831.6 796 57.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 7.9e-239 830.9 758 70.3
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.1e-238 828.2 760 70.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 6.7e-238 827.8 760 72.0
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.0e-237 826.2 756 71.2
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 2.2e-236 822.8 761 71.0
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 2.4e-235 819.3 748 71.4
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 9.1e-235 817.4 754 71.1
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.5e-234 816.6 756 70.5
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-234 816.2 755 71.0
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.9e-234 814.7 748 70.5
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 7.7e-234 814.3 640 68.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.3e-233 813.5 755 70.6
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.3e-233 813.5 754 71.0
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.3e-233 813.5 766 70.2
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.8e-233 812.0 756 71.0
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 5.0e-233 811.6 774 67.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 6.5e-233 811.2 751 70.7
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 6.5e-233 811.2 743 70.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 8.5e-233 810.8 752 70.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.5e-232 809.3 756 70.9
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 3.2e-232 808.9 642 66.5
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 1.2e-231 807.0 758 72.0
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.6e-231 806.6 758 72.0
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 2.7e-231 805.8 754 70.6
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 3.6e-231 805.4 759 68.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.3e-230 802.7 748 69.0
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.3e-230 802.7 786 66.7
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 4.4e-229 798.5 749 71.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.7e-228 796.6 748 70.9
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.7e-228 796.6 830 66.1
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.2e-228 796.2 780 68.5
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 8.2e-228 794.3 745 70.2
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-227 793.9 785 58.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 5.9e-226 788.1 767 67.4
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 3.8e-225 785.4 767 69.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 6.5e-225 784.6 753 69.3
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 7.2e-224 781.2 776 64.9
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.1e-223 779.6 768 67.1
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 2.7e-223 779.2 767 69.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 6.1e-223 778.1 842 61.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.0e-222 777.3 767 69.2
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.6e-221 772.7 750 70.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.1e-219 765.8 790 57.3
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 9.1e-219 764.2 760 65.5
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.0e-218 763.1 749 70.5
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.3e-217 760.4 794 65.7
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 8.5e-217 757.7 777 64.5
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.9e-216 756.5 791 64.3
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 4.2e-216 755.4 762 66.3
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 5.5e-216 755.0 687 73.2
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 7.2e-216 754.6 843 63.2
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 7.2e-216 754.6 767 66.9
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.1e-215 753.1 791 64.1
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 8.0e-215 751.1 754 67.2
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-212 743.8 754 66.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.2e-212 743.0 779 57.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 2.8e-212 742.7 754 66.6
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.8e-212 742.7 750 66.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.1e-211 740.7 758 65.0
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.8e-211 740.0 752 66.1
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-211 739.6 754 66.7
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 2.4e-211 739.6 755 64.9
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 3.1e-211 739.2 752 65.8
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 8.6e-209 731.1 752 67.0
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 5.5e-208 728.4 754 66.7
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 8.0e-207 724.5 758 62.7
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.8e-206 723.4 751 65.1
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.5e-205 720.3 767 64.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 3.7e-204 715.7 783 62.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 6.3e-204 714.9 748 65.9
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 8.3e-204 714.5 748 65.2
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.8e-198 694.9 749 65.0
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 1.2e-197 694.1 761 64.7
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 5.8e-189 665.2 757 61.6
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.3e-188 664.1 794 59.9
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 3.3e-184 649.4 802 59.7
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-182 644.4 772 49.6
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.2e-181 641.0 798 56.9
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.7e-177 627.1 1242 43.6
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.2e-175 620.9 568 62.5
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 3.1e-174 616.3 751 56.2
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.2e-174 615.5 551 74.8
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.9e-172 609.8 726 61.6
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 9.6e-160 568.2 775 54.8
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 4.3e-152 542.7 771 54.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 4.0e-150 536.2 652 52.1
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 4.2e-147 526.2 761 55.6
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.6e-146 524.2 454 63.9
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 2.6e-141 506.9 762 54.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.6e-135 487.6 760 53.9
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.0e-124 451.8 538 49.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.1e-123 448.4 439 55.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 8.0e-114 415.6 654 42.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 8.0e-106 389.0 378 58.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 7.0e-102 375.9 336 82.7
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.9e-100 370.5 355 79.2
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.5e-99 368.2 335 80.3
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.8e-97 361.3 303 88.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 3.6e-90 337.0 381 53.8
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.0e-72 278.1 769 33.0
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.9e-71 273.5 329 50.2
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.0e-65 253.8 261 54.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 2.9e-63 247.7 490 36.1
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.7e-63 247.3 188 65.4
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 3.2e-62 244.2 845 38.1
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.5e-56 225.3 702 29.8
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-56 224.9 241 54.4
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.8e-49 201.8 117 82.1
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 4.4e-48 197.2 484 32.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.0e-41 172.9 98 86.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.4e-38 163.7 92 83.7
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-36 157.1 242 42.6
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-32 145.6 82 86.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.0e-31 142.9 238 40.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-31 141.4 82 80.5
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-30 139.0 113 64.6
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-30 137.1 84 81.0
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 5.7e-27 127.1 93 69.9
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 5.7e-27 127.1 167 49.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-26 125.9 105 64.8
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 3.7e-26 124.4 158 45.6
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-25 122.9 67 82.1
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 1.3e-23 115.9 111 58.6
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-23 115.9 142 49.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 2.2e-23 115.2 156 96.8
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.4e-23 113.2 70 77.1
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-22 111.3 59 86.4
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 7.1e-22 110.2 82 69.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 109.4 61 83.6
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-21 108.2 61 82.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 1.1e-19 102.8 154 92.2
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 3.4e-16 91.3 109 52.3
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.6e-13 82.4 111 45.9
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.7e-13 81.6 157 41.4
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 6.1e-13 80.5 208 33.2
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-12 78.6 59 67.8
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-09 68.6 140 38.6
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 5.3e-09 67.4 58 56.9
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.9e-08 63.9 34 88.2
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-07 62.0 33 87.9
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.2e-07 62.0 34 85.3
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 5.0e-07 60.8 43 65.1
SEGI_28507 Sequoiadendron giganteum HOM05D004098 ORTHO05D021823 5.0e-07 60.8 34 82.4
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-07 60.5 38 68.4
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.9e-06 58.9 34 82.4
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 4.2e-06 57.8 34 73.5


User provided reference genes

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