Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g224880 Pisum sativum HOM05D038204 ORTHO05D001752 3.3e-279 964.5 527 100.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.9e-102 376.7 216 89.4
Psat2g029240 Pisum sativum HOM05D002119 ORTHO05D003631 8.5e-78 295.4 238 68.5
Psat7g150800 Pisum sativum HOM05D001894 ORTHO05D001752 3.2e-77 293.5 185 84.3
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 1.0e-67 261.9 250 60.4
Psat6g097440 Pisum sativum HOM05D038204 ORTHO05D001752 1.0e-51 208.8 144 81.2
Psat0s4118g0040 Pisum sativum HOM05D038204 ORTHO05D001752 5.7e-50 203.0 177 66.7
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 3.3e-45 187.2 125 76.8
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.9e-32 144.8 191 47.1
Psat5g216360 Pisum sativum HOM05D001746 ORTHO05D327102 5.4e-32 143.3 113 94.7
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 6.0e-31 139.8 116 68.1
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.0e-27 127.1 124 57.3
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 8.9e-27 125.9 100 62.0
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 9.8e-26 122.5 110 62.7
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 6.4e-25 119.8 116 61.2
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.4e-24 117.9 206 38.8
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.1e-24 117.1 104 53.8
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.5e-23 114.0 113 54.0
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 4.6e-23 113.6 103 62.1
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 2.3e-22 111.3 64 84.4
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.3e-21 107.1 235 36.2
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 8.9e-19 99.4 94 54.3
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 2.6e-18 97.8 64 75.0
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 2.6e-18 97.8 91 60.4
Psat1g002000 Pisum sativum HOM05D002115 ORTHO05D002263 7.6e-18 96.3 58 82.8
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 6.4e-17 93.2 64 73.4
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.2e-15 89.0 64 68.8
TPR.G27155 Trifolium pratense HOM05D002115 ORTHO05D002263 2.7e-15 87.8 55 78.2
Glyma.20G069750 Glycine max HOM05D003502 ORTHO05D004250 1.1e-13 82.4 62 69.4
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.5e-13 82.0 115 44.3
Ca_03710_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 1.5e-13 82.0 58 70.7
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.5e-13 82.0 62 67.7
Glyma.15G253100 Glycine max HOM05D002115 ORTHO05D002263 2.5e-13 81.3 75 57.3
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 5.6e-13 80.1 84 51.2
Glyma.08G174100 Glycine max HOM05D002115 ORTHO05D002263 1.2e-12 79.0 58 67.2
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 1.6e-12 78.6 102 50.0
Psat0s2310g0160 Pisum sativum HOM05D002022 ORTHO05D002056 2.1e-12 78.2 45 80.0
Psat7g152120 Pisum sativum HOM05D001236 ORTHO05D001090 2.1e-12 78.2 45 80.0
Psat7g152080 Pisum sativum HOM05D001236 ORTHO05D001090 1.4e-11 75.5 42 83.3
VMungo1080G0789 Vigna mungo HOM05D002115 ORTHO05D002263 2.4e-11 74.7 58 65.5
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 2.4e-11 74.7 104 44.2
Lalb_Chr25g0285231 Lupinus albus HOM05D002115 ORTHO05D002263 4.0e-11 73.9 69 53.6
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 6.8e-11 73.2 101 44.6
Phvul.005G054700 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 6.8e-11 73.2 73 57.5
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.5e-10 72.0 64 56.2
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 2.0e-10 71.6 112 42.0
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 2.6e-10 71.2 94 47.9
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 2.6e-10 71.2 82 52.4
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 4.4e-10 70.5 99 43.4
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.4e-10 70.5 99 43.4
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 4.4e-10 70.5 78 50.0
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.4e-10 70.5 70 54.3
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 9.9e-10 69.3 63 57.1
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 9.9e-10 69.3 64 54.7
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.3e-09 68.9 64 54.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.3e-09 68.9 64 54.7
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 1.3e-09 68.9 64 54.7
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 1.7e-09 68.6 63 55.6
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.2e-09 68.2 99 43.4
MSTRG.14265 Avicennia marina HOM05D002115 ORTHO05D002263 2.9e-09 67.8 53 60.4
PGR031G3691 Punica granatum HOM05D002115 ORTHO05D002263 2.9e-09 67.8 59 59.3
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 3.8e-09 67.4 79 50.6
Lj3g0017411 Lotus japonicus HOM05D002115 ORTHO05D002263 4.9e-09 67.0 111 45.9
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 6.4e-09 66.6 119 39.5
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 6.4e-09 66.6 73 47.9
TAR624G0570 Trochodendron aralioides HOM05D003502 ORTHO05D004250 8.4e-09 66.2 99 39.4
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 1.1e-08 65.9 63 55.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 1.1e-08 65.9 108 42.6
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 1.1e-08 65.9 102 42.2
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 1.4e-08 65.5 62 50.0
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.4e-08 65.5 64 53.1
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 1.4e-08 65.5 87 46.0
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 2.4e-08 64.7 62 54.8
SalBow7G3109 Salvia bowleyana HOM05D002115 ORTHO05D002263 2.4e-08 64.7 53 56.6
SalBow7G3339 Salvia bowleyana HOM05D002115 ORTHO05D002263 2.4e-08 64.7 53 56.6
arahy.Tifrunner.gnm1.ann1.GIH6UL Arachis hypogaea HOM05D002115 ORTHO05D002263 3.2e-08 64.3 52 63.5
arahy.Tifrunner.gnm1.ann1.T6TPBC Arachis hypogaea HOM05D002115 ORTHO05D002263 3.2e-08 64.3 52 63.5
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 3.2e-08 64.3 64 53.1
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 3.2e-08 64.3 63 55.6
SGA_v2.0_scaffold130G34243 Striga asiatica HOM05D002115 ORTHO05D002263 3.2e-08 64.3 53 58.5
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 4.2e-08 63.9 87 44.8
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 5.4e-08 63.5 108 40.7
Gorai.012G007600 Gossypium raimondii HOM05D003502 ORTHO05D004250 5.4e-08 63.5 108 40.7
CSS0006096 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 7.1e-08 63.2 47 63.8
CSS0012321 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 7.1e-08 63.2 47 63.8
SGA_v2.0_scaffold4G02144 Striga asiatica HOM05D002115 ORTHO05D002263 7.1e-08 63.2 51 60.8
Dinv21343 Davidia involucrata HOM05D002115 ORTHO05D002263 9.3e-08 62.8 43 67.4
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 9.3e-08 62.8 58 55.2
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 9.3e-08 62.8 73 46.6
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.2e-07 62.4 96 42.7
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 1.2e-07 62.4 63 52.4
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.2e-07 62.4 107 38.3
Actinidia18815 Actinidia chinensis HOM05D002115 ORTHO05D002263 1.6e-07 62.0 52 55.8
CSS0007528 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.6e-07 62.0 50 60.0
CSS0039958 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.6e-07 62.0 50 60.0
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 1.6e-07 62.0 79 48.1
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.6e-07 62.0 64 51.6
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 2.7e-07 61.2 42 69.0
Lj8A139T62 Lonicera japonica HOM05D002115 ORTHO05D002263 2.7e-07 61.2 59 54.2
DCAR_019646 Daucus carota HOM05D002115 ORTHO05D002263 3.5e-07 60.8 59 54.2
Rhsim04G0032200 Rhododendron simsii HOM05D002115 ORTHO05D002263 3.5e-07 60.8 47 59.6
Ah.06g187380 Amaranthus hybridus HOM05D002115 ORTHO05D002263 4.6e-07 60.5 59 54.2
Cc05_g09970 Coffea canephora HOM05D002115 ORTHO05D002263 4.6e-07 60.5 53 54.7
Migut.H02057 Erythranthe guttata HOM05D002115 ORTHO05D002263 4.6e-07 60.5 96 40.6
Nn3g20355 Nelumbo nucifera HOM05D002115 ORTHO05D002263 4.6e-07 60.5 53 54.7
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 4.6e-07 60.5 110 34.5
THA.LOC104813972 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 4.6e-07 60.5 53 60.4
EL10Ac4g08514 Beta vulgaris HOM05D002115 ORTHO05D002263 6.0e-07 60.1 59 55.9
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 7.8e-07 59.7 81 44.4
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 1.0e-06 59.3 64 46.9
DCAR_013808 Daucus carota HOM05D002115 ORTHO05D002263 1.0e-06 59.3 53 56.6
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 1.0e-06 59.3 99 41.4
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 1.0e-06 59.3 100 39.0
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 1.3e-06 58.9 129 33.3
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 1.3e-06 58.9 89 41.6
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 1.3e-06 58.9 90 42.2
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 1.7e-06 58.5 64 48.4
Medtr2g064880 Medicago truncatula HOM05D002115 ORTHO05D002263 1.7e-06 58.5 71 47.9
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 1.7e-06 58.5 59 52.5
AT1G17210 Arabidopsis thaliana HOM05D002115 ORTHO05D002263 2.3e-06 58.2 53 60.4
Eucgr.F03190 Eucalyptus grandis HOM05D002115 ORTHO05D002263 2.3e-06 58.2 53 56.6
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 2.3e-06 58.2 47 59.6
PSO541G2268 Papaver somniferum HOM05D002115 ORTHO05D002263 3.0e-06 57.8 53 50.9
Oeu012707.1 Olea europaea HOM05D002115 ORTHO05D002263 3.9e-06 57.4 74 45.9
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 5.1e-06 57.0 78 41.0
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 5.1e-06 57.0 88 37.5
Peaxi162Scf00111g00532 Petunia axillaris HOM05D002115 ORTHO05D002263 5.1e-06 57.0 49 57.1
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 5.1e-06 57.0 91 42.9
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 6.6e-06 56.6 49 55.1
Thhalv10006705m.g Eutrema salsugineum HOM05D002115 ORTHO05D002263 6.6e-06 56.6 59 55.9
MBI18_g11225_MAGBIO Magnolia biondii HOM05D002115 ORTHO05D002263 6.6e-06 56.6 165 30.3
Nitab4.5_0004166g0030 Nicotiana tabacum HOM05D002115 ORTHO05D002263 6.6e-06 56.6 49 55.1
Sp1g15350 Schrenkiella parvula HOM05D002115 ORTHO05D002263 6.6e-06 56.6 59 55.9
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 8.7e-06 56.2 46 56.5


User provided reference genes

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