Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 4.2e-198 694.5 356 100.0
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 4.9e-186 654.4 356 95.2
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 5.6e-182 641.0 356 93.5
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 1.9e-177 625.9 356 91.3
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 3.2e-177 625.2 356 91.9
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 2.1e-168 595.9 357 86.6
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.0e-167 593.6 357 86.3
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.9e-166 589.3 357 86.3
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 7.3e-166 587.4 357 85.4
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 8.1e-165 583.9 371 83.6
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 5.6e-158 561.2 340 84.7
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 6.2e-157 557.8 358 83.0
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 3.4e-155 552.0 369 79.7
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 6.9e-148 527.7 307 87.9
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 2.7e-144 515.8 356 79.8
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 5.1e-143 511.5 356 74.7
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 8.1e-141 504.2 356 75.0
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 1.8e-140 503.1 356 74.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 3.4e-139 498.8 318 81.1
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 4.5e-139 498.4 355 73.8
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 9.9e-139 497.3 359 74.1
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.1e-137 493.8 356 71.6
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.9e-137 493.0 356 74.7
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 3.2e-137 492.3 364 72.3
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 4.2e-137 491.9 320 78.8
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 5.4e-137 491.5 363 71.9
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 5.4e-137 491.5 356 75.3
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.6e-136 490.0 341 75.4
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 2.7e-136 489.2 348 72.4
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.0e-135 487.3 311 80.1
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.3e-135 486.9 301 80.7
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 5.1e-135 485.0 363 71.3
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 8.7e-135 484.2 363 71.1
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 8.7e-135 484.2 333 76.3
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 1.1e-134 483.8 301 83.1
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 1.5e-134 483.4 359 73.5
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 1.9e-134 483.0 298 84.2
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 7.4e-134 481.1 301 83.1
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 1.4e-132 476.9 356 71.6
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 3.1e-132 475.7 322 78.3
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 3.1e-132 475.7 302 81.5
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.2e-131 473.8 356 71.3
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.5e-131 473.4 327 76.1
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 5.8e-131 471.5 357 70.9
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 7.6e-131 471.1 356 71.1
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 7.6e-131 471.1 300 81.7
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.9e-130 469.2 356 70.8
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 6.5e-130 468.0 353 71.4
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 6.5e-130 468.0 309 78.3
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 8.4e-130 467.6 357 70.6
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.1e-129 467.2 356 70.8
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 1.4e-129 466.8 351 71.5
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 1.9e-129 466.5 346 70.8
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 2.7e-128 462.6 350 69.7
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 3.9e-127 458.8 346 69.7
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 6.7e-127 458.0 350 69.1
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 8.7e-127 457.6 353 69.4
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.5e-126 456.8 301 76.1
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 2.5e-126 456.1 319 77.1
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 3.3e-126 455.7 292 81.2
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 4.3e-126 455.3 300 75.7
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 7.4e-126 454.5 316 74.1
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.3e-125 453.8 316 74.1
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 2.1e-125 453.0 352 68.8
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 3.7e-125 452.2 302 75.8
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 3.7e-125 452.2 302 75.8
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 4.8e-125 451.8 296 78.4
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 8.2e-125 451.1 302 75.5
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 1.1e-124 450.7 321 73.2
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.4e-124 449.5 357 68.3
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 3.1e-124 449.1 357 69.2
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 4.1e-124 448.7 354 68.6
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 4.1e-124 448.7 356 68.3
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 9.0e-124 447.6 351 68.1
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 9.0e-124 447.6 361 67.9
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 1.2e-123 447.2 321 72.9
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 5.8e-123 444.9 361 67.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 7.6e-123 444.5 318 72.6
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 3.8e-122 442.2 292 79.5
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 1.2e-120 437.2 353 67.4
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 2.1e-120 436.4 302 75.8
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.5e-120 435.6 356 67.4
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 3.5e-120 435.6 353 66.9
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.0e-119 434.1 368 66.8
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 1.0e-119 434.1 358 66.5
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.3e-119 433.7 356 69.1
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 1.3e-119 433.7 352 66.8
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 3.0e-119 432.6 353 66.9
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 1.9e-118 429.9 292 76.7
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 5.7e-118 428.3 308 73.7
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 5.3e-116 421.8 362 63.0
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 9.0e-116 421.0 327 68.8
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 3.4e-115 419.1 242 91.3
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 5.9e-115 418.3 352 64.5
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 7.7e-115 417.9 301 71.4
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.1e-113 414.1 290 74.5
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 1.4e-113 413.7 317 69.7
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 2.5e-113 412.9 353 64.3
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.2e-113 412.1 354 64.4
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 5.5e-113 411.8 306 71.6
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 1.2e-112 410.6 351 64.1
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 1.6e-112 410.2 353 63.7
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 1.6e-112 410.2 306 71.2
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.7e-112 409.5 353 64.0
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.9e-112 407.9 353 63.5
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 1.0e-111 407.5 344 64.8
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.4e-111 407.1 298 72.1
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 3.4e-107 392.5 261 75.1
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 7.7e-107 391.3 300 70.0
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 3.8e-106 389.0 261 76.6
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 8.5e-106 387.9 353 63.5
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 3.2e-105 386.0 289 68.9
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 7.2e-105 384.8 258 76.4
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 3.0e-103 379.4 296 66.9
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 3.0e-103 379.4 265 72.5
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 4.4e-102 375.6 261 73.6
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.1e-100 369.4 353 60.1
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 4.5e-99 365.5 321 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.2e-96 357.5 248 75.4
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 8.5e-90 334.7 252 66.3
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.8e-85 319.7 252 64.7
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 2.0e-83 313.5 269 65.4
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 4.7e-80 302.4 177 91.5
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 4.9e-77 292.4 277 56.3
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 2.6e-70 270.0 305 53.8
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 7.0e-68 261.9 172 76.7
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.2e-67 261.2 191 75.4
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 7.8e-51 205.3 157 68.8
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 1.5e-46 191.0 124 73.4
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 3.5e-43 179.9 103 91.3
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 3.9e-34 149.8 103 76.7
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 3.9e-34 149.8 103 76.7
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 3.6e-32 143.3 103 66.0
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 8.7e-26 122.1 226 40.3
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.1e-20 105.1 62 83.9
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 9.3e-20 102.1 192 32.3
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 2.7e-11 73.9 46 71.7


User provided reference genes

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