Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 0.0e+00 1176.0 597 100.0
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.0e-289 999.6 576 85.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 8.7e-289 996.5 578 86.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.3e-255 886.3 569 75.7
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 4.8e-255 884.4 569 75.9
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.0e-249 866.7 576 75.7
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.3e-236 823.2 628 67.7
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 3.0e-236 822.0 589 69.3
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 8.9e-233 810.4 576 67.7
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 4.9e-231 804.7 581 67.5
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 5.4e-230 801.2 576 67.9
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 9.2e-230 800.4 607 65.6
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 9.2e-230 800.4 579 68.4
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 3.5e-229 798.5 577 67.6
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 4.6e-229 798.1 578 67.0
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 3.9e-228 795.0 578 67.5
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.4e-225 786.6 577 67.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 5.2e-225 784.6 570 65.6
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.6e-224 782.3 576 64.8
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 3.4e-224 781.9 580 65.5
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.7e-223 779.6 581 65.7
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.2e-222 775.4 578 64.2
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.7e-221 772.3 580 64.1
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.5e-221 771.9 576 63.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 3.5e-221 771.9 578 65.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.7e-220 769.6 534 67.6
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 6.6e-220 767.7 568 64.6
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.1e-219 766.9 578 65.9
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.9e-219 766.1 577 64.0
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 5.6e-219 764.6 569 66.4
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 8.9e-217 757.3 493 73.8
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.6e-216 755.7 538 65.8
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 3.4e-216 755.4 579 64.6
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 5.8e-216 754.6 575 64.2
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.7e-215 753.1 573 63.4
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 2.2e-215 752.7 576 62.8
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.9e-215 752.3 577 64.3
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 3.2e-214 748.8 578 63.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 7.1e-214 747.7 569 63.8
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 2.1e-213 746.1 573 63.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.5e-213 745.3 578 62.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 4.6e-213 745.0 578 63.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.0e-212 743.8 580 62.6
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 1.3e-212 743.4 578 62.1
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 5.1e-212 741.5 582 62.0
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 8.6e-212 740.7 573 62.8
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.5e-211 740.0 565 63.4
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.9e-211 739.6 573 62.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.9e-211 739.6 578 61.8
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.5e-211 739.2 565 63.4
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 4.7e-210 734.9 536 65.7
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 4.7e-210 734.9 556 63.1
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.4e-209 733.4 578 61.9
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.8e-209 733.0 538 63.6
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 3.1e-209 732.3 596 60.2
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 4.0e-209 731.9 578 61.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 9.0e-209 730.7 569 62.2
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 3.4e-208 728.8 614 59.8
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 5.8e-208 728.0 536 63.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 5.8e-208 728.0 561 62.6
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.7e-207 726.5 580 61.2
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 3.8e-207 725.3 579 61.0
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.0e-204 717.2 514 66.1
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 1.0e-204 717.2 574 62.0
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 2.5e-203 712.6 586 59.7
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 2.4e-201 706.1 585 59.7
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 5.3e-201 704.9 616 61.2
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.5e-200 703.4 645 55.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.6e-200 702.6 569 61.3
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 7.1e-198 694.5 564 59.6
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.5e-195 686.8 543 60.6
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 6.2e-194 681.4 580 59.5
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.3e-191 673.7 536 59.1
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 2.8e-186 656.0 575 56.3
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 1.8e-185 653.3 463 67.6
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 1.2e-184 650.6 460 66.3
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 3.8e-183 645.6 462 65.8
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 3.8e-183 645.6 460 65.9
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 4.8e-178 628.6 460 64.6
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 2.8e-170 602.8 527 58.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 8.2e-170 601.3 537 57.4
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 3.4e-168 595.9 458 61.8
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.9e-167 592.8 462 63.2
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 1.4e-166 590.5 401 69.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 5.1e-164 582.0 545 54.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.3e-162 575.1 463 61.3
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 1.0e-159 567.8 511 56.2
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 2.2e-159 566.6 510 58.4
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 6.1e-157 558.5 573 48.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 1.5e-155 553.9 572 48.8
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 6.3e-154 548.5 296 88.5
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.2e-149 534.3 534 51.1
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.0e-148 529.3 530 48.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.2e-143 513.5 351 69.5
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.2e-139 501.1 395 62.5
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.9e-127 459.9 320 65.6
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 8.6e-119 431.8 293 73.7
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.4e-116 424.5 353 60.1
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 8.1e-109 398.7 536 42.4
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 1.2e-101 374.8 267 67.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.1e-100 371.7 310 57.1
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 4.3e-94 349.7 554 39.9
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 4.7e-93 346.3 236 68.2
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.6e-88 331.3 721 32.5
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.3e-87 327.4 251 62.2
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 2.1e-85 320.9 569 36.0
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 5.6e-78 296.2 190 74.2
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 8.4e-74 282.3 454 37.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 4.8e-69 266.5 518 35.5
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.1e-63 246.5 203 61.1
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.7e-56 224.2 521 31.3
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.4e-55 221.9 597 27.6
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 6.9e-52 209.5 140 67.1
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 3.4e-51 207.2 397 36.0
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 2.6e-46 191.0 123 74.0
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 6.1e-40 169.9 97 84.5
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 4.2e-25 120.6 581 25.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 5.5e-25 120.2 140 45.7
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.3e-23 114.8 82 63.4
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.0e-23 114.4 75 68.0
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.8e-22 109.4 82 67.1
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 7.0e-20 103.2 113 48.7
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.7e-19 101.3 110 48.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 1.3e-18 99.0 105 45.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 2.3e-18 98.2 121 47.1
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.6e-16 92.0 115 43.5
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.8e-16 91.3 156 36.5
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.6e-16 90.9 113 43.4
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 3.0e-15 87.8 57 63.2
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.2e-14 85.9 56 67.9
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 2.5e-09 68.2 55 56.4
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.2e-08 65.9 46 69.6
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 6.1e-08 63.5 58 55.2
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 5.2e-07 60.5 35 77.1
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.0e-06 58.5 38 68.4
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 2.0e-06 58.5 38 68.4
C08p31170 Brassica napus HOM05D035890 ORTHO05D033370 5.8e-06 57.0 53 54.7


User provided reference genes

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