Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g144280 Pisum sativum HOM05D003114 ORTHO05D003519 2.8e-28 127.9 62 100.0
Medtr3g111590 Medicago truncatula HOM05D003114 ORTHO05D003519 3.7e-25 117.5 62 90.3
Ca_15530_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 1.1e-24 115.9 62 90.3
TWI12G1412 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 2.7e-23 111.3 63 88.9
Aa31sc119G20 Aethionema arabicum HOM05D003114 ORTHO05D003519 4.6e-23 110.5 63 85.7
Carub.0001s3632 Capsella rubella HOM05D003114 ORTHO05D003519 4.6e-23 110.5 63 85.7
CARHR037120 Cardamine hirsuta HOM05D003114 ORTHO05D003519 4.6e-23 110.5 63 85.7
Thhalv10011225m.g Eutrema salsugineum HOM05D003114 ORTHO05D003519 4.6e-23 110.5 63 85.7
Sp1g34560 Schrenkiella parvula HOM05D003114 ORTHO05D003519 4.6e-23 110.5 63 85.7
BcaC08g42958 Brassica carinata HOM05D003114 ORTHO05D003519 1.0e-22 109.4 63 84.1
A10p06300 Brassica napus HOM05D003114 ORTHO05D003519 1.0e-22 109.4 63 84.1
C06p01990 Brassica napus HOM05D003114 ORTHO05D003519 1.0e-22 109.4 63 84.1
Medtr3g082900 Medicago truncatula HOM05D003114 ORTHO05D003519 1.0e-22 109.4 62 83.9
Atru.chr13.574 Acer truncatum HOM05D003114 ORTHO05D003519 1.7e-22 108.6 63 85.7
Gohir.A11G227433 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.7e-22 108.6 63 81.0
Gorai.007G245700 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.7e-22 108.6 63 81.0
BcaB07g33828 Brassica carinata HOM05D003114 ORTHO05D003519 2.3e-22 108.2 63 82.5
Glyma.04G034700 Glycine max HOM05D003114 ORTHO05D003519 2.3e-22 108.2 63 84.1
Lj5g0027441 Lotus japonicus HOM05D003114 ORTHO05D003519 2.3e-22 108.2 63 85.7
Potri.014G039100 Populus trichocarpa HOM05D003114 ORTHO05D003519 2.3e-22 108.2 63 85.7
AT1G47560 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 84.1
EL10Ac5g11704 Beta vulgaris HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
CANSAT21G1752 Cannabis sativa HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
CANSAT25G1109 Cannabis sativa HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
AUR62038454 Chenopodium quinoa HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
AUR62042151 Chenopodium quinoa HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Ca_13324_v3 Cicer arietinum L. HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Duzib041G0357 Durio zibethinus HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Duzib093G1140 Durio zibethinus HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Manes.18G031300 Manihot esculenta HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Medtr1g021680 Medicago truncatula HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Psat6g010640 Pisum sativum HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Prupe.1G385700 Prunus persica HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
QL02p007130 Quercus lobata HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Sc07g0007470 Simmondsia chinensis HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
Thecc.08G020200 Theobroma cacao HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
TPR.G15746 Trifolium pratense HOM05D003114 ORTHO05D003519 3.0e-22 107.8 63 85.7
CiPaw.15G069400 Carya illinoinensis HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 85.7
Ciclev10000230m.g Citrus clementina HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 85.7
FvH4_2g40450 Fragaria vesca HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
FAN15G2607 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
FAN20G2585 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
FAN27G1632 Fragaria x ananassa HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
MD00G1038900 Malus domestica HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
MD08G1038000 Malus domestica HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
RcHm_v2.0_Chr6g0300281 Rosa chinensis HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
THA.LOC104803395 Tarenaya hassleriana HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 84.1
TWI36G0061 Tripterygium wilfordii HOM05D003114 ORTHO05D003519 3.9e-22 107.5 63 85.7
Lj1g0027709 Lotus japonicus HOM05D003114 ORTHO05D003519 5.0e-22 107.1 63 84.1
Potri.002G131400 Populus trichocarpa HOM05D003114 ORTHO05D003519 5.0e-22 107.1 63 85.7
Cpa.g.sc64.34 Carica papaya HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 84.1
Cfa018458 Carpinus fangiana HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 84.1
ClCG05G019260 Citrullus lanatus HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 85.7
Haze_17610 Corylus avellana HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 84.1
MELO3C003892.2 Cucumis melo HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 85.7
Gohir.D11G228600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 79.4
Lalb_Chr14g0368971 Lupinus albus HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 85.7
Sabra02G0103300 Salix brachista HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 84.1
Sed0016520 Sechium edule HOM05D003114 ORTHO05D003519 6.6e-22 106.7 63 85.7
arahy.Tifrunner.gnm1.ann1.E8QAF1 Arachis hypogaea HOM05D003114 ORTHO05D003519 8.6e-22 106.3 63 84.1
arahy.Tifrunner.gnm1.ann1.SVX42N Arachis hypogaea HOM05D003114 ORTHO05D003519 8.6e-22 106.3 63 84.1
CiPaw.16G052700 Carya illinoinensis HOM05D003114 ORTHO05D003519 8.6e-22 106.3 62 85.5
AL1G53790 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.1e-21 105.9 64 84.4
AT1G47550 Arabidopsis thaliana HOM05D003114 ORTHO05D003519 1.1e-21 105.9 64 84.4
MSTRG.1310 Avicennia marina HOM05D003114 ORTHO05D003519 1.1e-21 105.9 63 81.0
Dinv36027 Davidia involucrata HOM05D003114 ORTHO05D003519 1.1e-21 105.9 63 82.5
Dinv39367 Davidia involucrata HOM05D003114 ORTHO05D003519 1.1e-21 105.9 63 82.5
vmacro04486 Vaccinium macrocarpon HOM05D003114 ORTHO05D003519 1.1e-21 105.9 63 82.5
CsaV3_3G044820 Cucumis sativus L. HOM05D003114 ORTHO05D003519 1.5e-21 105.5 63 84.1
Nn6g32175 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.5e-21 105.5 63 84.1
PGR031G3129 Punica granatum HOM05D003114 ORTHO05D003519 1.5e-21 105.5 63 84.1
Rhsim12G0123700 Rhododendron simsii HOM05D003114 ORTHO05D003519 1.5e-21 105.5 63 82.5
SGA_v2.0_scaffold24G10278 Striga asiatica HOM05D003114 ORTHO05D003519 1.5e-21 105.5 63 81.0
Lalb_Chr08g0245771 Lupinus albus HOM05D003114 ORTHO05D003519 1.9e-21 105.1 63 84.1
Migut.C00667 Erythranthe guttata HOM05D003114 ORTHO05D003519 2.5e-21 104.8 63 81.0
SalBow8G4186 Salvia bowleyana HOM05D003114 ORTHO05D003519 2.5e-21 104.8 63 81.0
Hma1.2p1_0260F.1_g104360 Hydrangea macrophylla HOM05D003114 ORTHO05D003519 3.3e-21 104.4 63 79.4
Lalb_Chr24g0399101 Lupinus albus HOM05D003114 ORTHO05D003519 3.3e-21 104.4 63 82.5
Os03g0625700 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 3.3e-21 104.4 63 81.0
TAR625G0620 Trochodendron aralioides HOM05D003114 ORTHO05D003519 3.3e-21 104.4 63 82.5
GSVIVG01009623001 Vitis vinifera HOM05D003114 ORTHO05D003519 3.3e-21 104.4 63 82.5
PSO541G3592 Papaver somniferum HOM05D003114 ORTHO05D003519 4.3e-21 104.0 63 84.1
MSTRG.22284 Avicennia marina HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
Migut.N02678 Erythranthe guttata HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 79.4
Gohir.A05G197600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 82.5
Nitab4.5_0000453g0100 Nicotiana tabacum HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
Nitab4.5_0000790g0060 Nicotiana tabacum HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
PSO675G2900 Papaver somniferum HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 82.5
Peaxi162Scf00064g00324 Petunia axillaris HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
Solyc12g088990.2 Solanum lycopersicum HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
Sopen12g030890 Solanum pennellii HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
VMungo1309G2059 Vigna mungo HOM05D003114 ORTHO05D003519 5.6e-21 103.6 63 81.0
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 7.3e-21 103.2 63 82.5
Eucgr.A00473 Eucalyptus grandis HOM05D003114 ORTHO05D003519 7.3e-21 103.2 63 81.0
MSTRG.24311 Avicennia marina HOM05D003114 ORTHO05D003519 9.5e-21 102.8 63 79.4
Sed0021383 Sechium edule HOM05D003114 ORTHO05D003519 9.5e-21 102.8 62 83.9
Zm00001eb051220 Zea mays HOM05D003114 ORTHO05D003519 9.5e-21 102.8 63 79.4
Cc10_g03540 Coffea canephora HOM05D003114 ORTHO05D003519 1.2e-20 102.4 63 81.0
Gohir.D05G200600 Gossypium hirsutum HOM05D003114 ORTHO05D003519 1.2e-20 102.4 63 81.0
Gorai.009G205900 Gossypium raimondii HOM05D003114 ORTHO05D003519 1.2e-20 102.4 63 81.0
Lalb_Chr22g0355331 Lupinus albus HOM05D003114 ORTHO05D003519 1.2e-20 102.4 63 82.5
Nn5g29441 Nelumbo nucifera HOM05D003114 ORTHO05D003519 1.2e-20 102.4 63 82.5
Actinidia38026 Actinidia chinensis HOM05D003114 ORTHO05D003519 1.6e-20 102.1 63 79.4
BolC6t35330H Brassica oleracea HOM05D003114 ORTHO05D003519 1.6e-20 102.1 71 74.6
BraA10t42896Z Brassica rapa HOM05D003114 ORTHO05D003519 1.6e-20 102.1 71 74.6
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 1.6e-20 102.1 64 79.7
Migut.E01196 Erythranthe guttata HOM05D003114 ORTHO05D003519 1.6e-20 102.1 63 77.8
MBI16_g36197_MAGBIO Magnolia biondii HOM05D003114 ORTHO05D003519 2.1e-20 101.7 63 82.5
Oeu015606.1 Olea europaea HOM05D003114 ORTHO05D003519 2.8e-20 101.3 63 77.8
TAR381G0473 Trochodendron aralioides HOM05D003114 ORTHO05D003519 3.6e-20 100.9 63 79.4
Aqoxy5G01744 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 81.0
Glyma.09G114500 Glycine max HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 82.5
Glyma.17G246600 Glycine max HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 82.5
PSO170G0663 Papaver somniferum HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 77.8
PSO700G0395 Papaver somniferum HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 77.8
Phvul.001G017700 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 82.5
Phvul.007G175100 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 77.8
SEGI_35902 Sequoiadendron giganteum HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 77.8
SGA_v2.0_scaffold14G07047 Striga asiatica HOM05D003114 ORTHO05D003519 4.7e-20 100.5 62 79.0
HPP92_017781 Vanilla planifolia HOM05D003114 ORTHO05D003519 4.7e-20 100.5 63 81.0
Aqoxy6G00963 Aquilegia oxysepala HOM05D003114 ORTHO05D003519 6.2e-20 100.1 63 79.4
Lj4C47G8 Lonicera japonica HOM05D003114 ORTHO05D003519 6.2e-20 100.1 63 77.8
ATR0733G144 Amborella trichopoda HOM05D003114 ORTHO05D003519 1.4e-19 99.0 63 77.8
Lj4C782G7 Lonicera japonica HOM05D003114 ORTHO05D003519 1.4e-19 99.0 63 77.8
CAN.G1002.6 Capsicum annuum HOM05D003114 ORTHO05D003519 1.8e-19 98.6 63 76.2
Nitab4.5_0002940g0050 Nicotiana tabacum HOM05D003114 ORTHO05D003519 1.8e-19 98.6 63 76.2
Peaxi162Scf01340g00219 Petunia axillaris HOM05D003114 ORTHO05D003519 1.8e-19 98.6 63 76.2
Nitab4.5_0008571g0020 Nicotiana tabacum HOM05D003114 ORTHO05D003519 2.3e-19 98.2 63 74.6
CAN.G389.2 Capsicum annuum HOM05D003114 ORTHO05D003519 4.0e-19 97.4 63 74.6
Lsat_1_v5_gn_1_19460 Lactuca sativa HOM05D003114 ORTHO05D003519 4.0e-19 97.4 63 76.2
DCAR_020951 Daucus carota HOM05D003114 ORTHO05D003519 5.2e-19 97.1 63 74.6
Oeu009593.2 Olea europaea HOM05D003114 ORTHO05D003519 5.2e-19 97.1 63 73.0
Sopen07g012830 Solanum pennellii HOM05D003114 ORTHO05D003519 5.2e-19 97.1 63 74.6
arahy.Tifrunner.gnm1.ann1.I3NIKD Arachis hypogaea HOM05D003114 ORTHO05D003519 8.9e-19 96.3 63 74.6
HanXRQChr02g0045841 Helianthus annuus HOM05D003114 ORTHO05D003519 8.9e-19 96.3 63 74.6
ECA247G0467 Erigeron canadensis HOM05D003114 ORTHO05D003519 1.5e-18 95.5 63 73.0
Os11g0276000 Oryza sativa ssp. japonica HOM05D003114 ORTHO05D003519 2.0e-18 95.1 63 71.4
PGR083G1829 Punica granatum HOM05D003114 ORTHO05D003519 2.6e-18 94.7 62 74.2
arahy.Tifrunner.gnm1.ann1.06HR6X Arachis hypogaea HOM05D003114 ORTHO05D003519 4.4e-18 94.0 63 73.0
Gohir.A05G260500 Gossypium hirsutum HOM05D003114 ORTHO05D003519 4.4e-18 94.0 63 74.6
unitig_26.g9826 Utricularia gibba HOM05D003114 ORTHO05D003519 5.8e-18 93.6 63 69.8
HPP92_006943 Vanilla planifolia HOM05D003114 ORTHO05D003519 5.8e-18 93.6 63 74.6
HPP92_006946 Vanilla planifolia HOM05D003114 ORTHO05D003519 5.8e-18 93.6 63 74.6
Zm00001eb168790 Zea mays HOM05D003114 ORTHO05D003519 1.3e-17 92.4 63 66.7
unitig_899.g15621 Utricularia gibba HOM05D003114 ORTHO05D003519 2.2e-17 91.7 62 72.6
SHI08192 Sapria himalayana HOM05D003114 ORTHO05D003519 3.7e-17 90.9 76 64.5
VMungo1309G1264 Vigna mungo HOM05D003114 ORTHO05D003519 1.1e-16 89.4 62 74.2
SalBow7G0889 Salvia bowleyana HOM05D003114 ORTHO05D003519 3.2e-16 87.8 63 66.7
SMO117G0063 Selaginella moellendorffii HOM05D003114 ORTHO05D003519 2.0e-15 85.1 63 63.5
Phvul.009G055500 Phaseolus vulgaris HOM05D003114 ORTHO05D003519 3.5e-15 84.3 63 68.3
Pp3c11_22450 Physcomitrium patens HOM05D003114 ORTHO05D003519 1.7e-14 82.0 63 68.3
HanXRQChr09g0268391 Helianthus annuus HOM05D003114 ORTHO05D003519 4.3e-13 77.4 63 55.6
CARHR037190 Cardamine hirsuta HOM05D003114 ORTHO05D003519 5.6e-13 77.0 64 64.1
Mapoly0013s0072 Marchantia polymorpha HOM05D003114 ORTHO05D003519 3.6e-12 74.3 62 62.9
ECA232G2779 Erigeron canadensis HOM05D003114 ORTHO05D003519 6.2e-12 73.6 63 52.4
AagrBONN_evm.TU.Sc2ySwM_228.1666 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.1e-11 72.8 62 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1675 Anthoceros agrestis HOM05D003114 ORTHO05D003519 1.1e-11 72.8 62 54.8
VMungo0540G2521 Vigna mungo HOM05D003114 ORTHO05D003519 6.8e-11 70.1 63 60.3
Ah.02g115940 Amaranthus hybridus HOM05D003114 ORTHO05D003519 4.4e-10 67.4 37 89.2
HanXRQChr16g0507961 Helianthus annuus HOM05D003114 ORTHO05D003519 4.4e-10 67.4 56 51.8
RcHm_v2.0_Chr6g0261041 Rosa chinensis HOM05D003114 ORTHO05D003519 1.9e-08 62.0 55 56.4
Pp3c1_15530 Physcomitrium patens HOM05D003114 ORTHO05D003519 1.3e-06 55.8 52 55.8
CBR_g3845 Chara braunii HOM05D003114 ORTHO05D003519 1.7e-06 55.5 61 42.6


User provided reference genes

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