Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 1.8e-47 192.2 95 100.0
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 9.4e-20 100.1 55 94.5
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 1.5e-17 92.8 55 85.5
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 2.0e-17 92.4 55 85.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 4.4e-17 91.3 55 87.3
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 1.1e-15 86.7 49 87.8
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 3.1e-15 85.1 60 71.7
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 2.0e-14 82.4 55 74.5
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 3.5e-14 81.6 55 72.7
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 5.9e-14 80.9 55 70.9
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 5.9e-14 80.9 55 72.7
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 5.9e-14 80.9 60 66.7
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 7.7e-14 80.5 55 70.9
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 7.7e-14 80.5 62 66.1
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 1.3e-13 79.7 60 65.0
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 1.7e-13 79.3 55 69.1
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 2.3e-13 79.0 55 72.7
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 2.3e-13 79.0 60 63.3
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.3e-13 79.0 60 63.3
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.3e-13 79.0 60 63.3
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 2.3e-13 79.0 54 75.9
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 2.9e-13 78.6 55 70.9
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.8e-13 78.2 55 67.3
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 5.0e-13 77.8 55 70.9
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 5.0e-13 77.8 60 61.7
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 5.0e-13 77.8 55 67.3
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 5.0e-13 77.8 55 67.3
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 6.5e-13 77.4 60 63.3
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 6.5e-13 77.4 54 72.2
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 6.5e-13 77.4 60 68.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 8.6e-13 77.0 55 69.1
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 8.6e-13 77.0 55 69.1
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 8.6e-13 77.0 60 61.7
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 1.1e-12 76.6 55 69.1
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 1.5e-12 76.3 60 65.0
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 1.9e-12 75.9 55 70.9
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 2.5e-12 75.5 55 61.8
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 2.5e-12 75.5 55 65.5
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 5.5e-12 74.3 55 65.5
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 5.5e-12 74.3 83 49.4
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 5.5e-12 74.3 59 61.0
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 9.5e-12 73.6 55 67.3
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 1.2e-11 73.2 55 65.5
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.6e-11 72.8 55 67.3
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 2.1e-11 72.4 61 62.3
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 2.1e-11 72.4 59 59.3
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 2.8e-11 72.0 83 48.2
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 8.0e-11 70.5 55 63.6
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 1.0e-10 70.1 55 56.4
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 1.0e-10 70.1 55 61.8
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 1.4e-10 69.7 55 63.6
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 1.4e-10 69.7 55 63.6
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 1.8e-10 69.3 55 63.6
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 2.3e-10 68.9 55 63.6
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 2.3e-10 68.9 55 61.8
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 3.0e-10 68.6 55 61.8
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 3.0e-10 68.6 55 54.5
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 4.0e-10 68.2 55 56.4
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 4.0e-10 68.2 55 60.0
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 4.0e-10 68.2 55 61.8
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 5.2e-10 67.8 55 52.7
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 6.8e-10 67.4 55 54.5
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 6.8e-10 67.4 60 48.3
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 6.8e-10 67.4 55 52.7
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 6.8e-10 67.4 55 52.7
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 6.8e-10 67.4 60 48.3
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 8.8e-10 67.0 55 50.9
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 8.8e-10 67.0 55 50.9
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 8.8e-10 67.0 55 50.9
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 8.8e-10 67.0 55 65.5
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 1.2e-09 66.6 55 56.4
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 1.2e-09 66.6 55 60.0
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 1.2e-09 66.6 55 60.0
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 2.0e-09 65.9 55 63.6
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 2.0e-09 65.9 55 50.9
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 2.0e-09 65.9 55 52.7
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 2.6e-09 65.5 55 60.0
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 3.4e-09 65.1 55 50.9
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 4.4e-09 64.7 55 58.2
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 5.7e-09 64.3 55 58.2
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 5.7e-09 64.3 55 49.1
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 5.7e-09 64.3 55 56.4
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 7.5e-09 63.9 55 52.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 7.5e-09 63.9 55 50.9
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 7.5e-09 63.9 55 58.2
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 7.5e-09 63.9 55 58.2
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 7.5e-09 63.9 55 56.4
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 9.8e-09 63.5 55 63.6
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 6.3e-08 60.8 63 52.4
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 8.3e-08 60.5 71 42.3
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 1.1e-07 60.1 55 52.7
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 1.1e-07 60.1 54 51.9
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 5.4e-07 57.8 53 54.7
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 2.0e-06 55.8 72 44.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 2.0e-06 55.8 54 48.1
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 3.5e-06 55.1 54 51.9
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 3.5e-06 55.1 54 50.0
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 4.5e-06 54.7 54 50.0
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 7.8e-06 53.9 54 50.0
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 7.8e-06 53.9 80 37.5


User provided reference genes

Program Settings