Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.2e-295 1017.7 514 100.0
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 2.1e-259 898.7 520 86.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.4e-256 887.1 518 85.3
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 6.9e-250 867.1 522 84.1
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.4e-239 832.8 516 80.6
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 4.2e-239 831.2 464 87.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.2e-239 831.2 520 80.8
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 3.9e-237 824.7 519 80.2
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.9e-237 824.7 516 80.8
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 6.7e-237 823.9 517 80.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-228 796.6 513 76.2
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.8e-227 792.0 474 81.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 4.8e-227 791.2 471 80.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.3e-227 790.8 514 75.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.4e-226 788.9 514 75.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.1e-226 788.5 514 75.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.9e-226 787.3 461 81.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.1e-226 786.9 519 75.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.5e-225 784.6 518 75.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.3e-224 783.1 471 79.8
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.7e-224 782.7 521 74.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.8e-224 781.6 469 80.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.8e-224 781.6 459 81.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 8.5e-224 780.4 521 74.5
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.1e-223 780.0 478 78.7
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-223 780.0 463 79.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.4e-223 779.6 465 80.6
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.9e-223 779.2 517 74.9
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.5e-223 778.9 486 77.6
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-223 778.5 459 80.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 7.2e-223 777.3 509 76.0
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-222 775.8 524 74.8
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.1e-222 775.8 521 74.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.7e-222 775.4 458 81.0
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 4.7e-222 774.6 512 75.4
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 6.1e-222 774.2 466 79.8
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.9e-221 771.5 459 80.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 3.9e-221 771.5 536 72.2
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.1e-220 770.0 523 74.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.5e-220 769.6 510 74.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 7.4e-220 767.3 486 76.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.4e-220 767.3 472 78.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 7.4e-220 767.3 521 72.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.2e-219 765.8 504 75.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.2e-219 765.8 472 77.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.2e-219 765.8 517 74.7
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.7e-219 765.0 474 77.2
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.8e-219 764.6 459 79.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.8e-219 764.6 472 78.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.3e-219 764.2 509 74.5
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-218 763.5 523 73.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-218 762.7 459 79.5
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.8e-218 762.7 471 77.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.1e-218 761.9 459 79.5
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.1e-218 761.5 509 73.7
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.3e-218 761.1 497 75.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.2e-217 760.0 557 70.6
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 2.0e-217 759.2 501 74.3
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.5e-217 758.4 523 72.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.5e-217 758.4 462 78.1
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.5e-217 758.4 545 70.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.5e-217 758.4 459 78.2
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.5e-217 758.1 467 77.9
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 5.9e-217 757.7 463 77.8
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.9e-217 757.7 518 72.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.0e-216 756.9 504 73.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.3e-216 756.5 462 77.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 5.0e-216 754.6 461 78.7
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.5e-216 754.2 531 72.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.5e-216 753.8 459 77.8
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.9e-215 752.7 519 73.0
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-215 752.7 517 71.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.5e-215 752.3 462 79.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 7.2e-215 750.7 463 78.8
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.2e-214 750.0 459 78.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.2e-214 750.0 459 78.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.1e-214 749.2 469 76.5
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.7e-214 748.0 510 72.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 8.0e-214 747.3 510 71.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.8e-213 746.1 526 70.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-212 742.7 459 76.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 7.4e-212 740.7 510 71.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-211 739.2 512 70.5
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 6.3e-211 737.6 510 70.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 6.3e-211 737.6 512 70.9
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.8e-210 736.1 510 71.4
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.4e-210 735.7 510 70.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.1e-210 734.9 515 70.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 5.3e-210 734.6 508 70.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-209 732.6 511 71.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-209 731.9 511 70.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.5e-209 731.9 509 72.1
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 5.9e-209 731.1 511 70.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.8e-208 728.4 508 70.1
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.5e-207 726.5 475 74.7
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.5e-207 725.7 559 66.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.4e-205 719.9 482 72.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.8e-205 719.5 478 74.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.2e-205 718.0 459 75.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.8e-203 711.4 531 67.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 8.3e-203 710.7 458 72.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 8.3e-203 710.7 491 70.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.8e-202 709.5 480 74.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.1e-199 700.3 456 73.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.2e-199 697.6 477 69.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 4.4e-196 688.3 459 71.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.4e-194 683.3 460 71.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.5e-193 678.7 375 87.7
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.0e-192 674.9 414 79.2
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.1e-191 673.7 461 71.6
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 9.5e-191 670.6 423 75.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.8e-189 666.4 466 69.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.3e-187 660.2 430 73.3
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.7e-187 658.7 375 84.8
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.8e-186 656.4 462 70.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 5.9e-185 651.4 518 66.2
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 7.8e-185 651.0 379 83.4
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.5e-183 646.7 450 72.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.3e-183 645.6 430 75.1
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-178 629.0 473 67.0
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 3.5e-177 625.5 491 64.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.5e-177 625.5 453 65.1
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-173 613.2 395 77.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.3e-173 612.8 715 48.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 6.6e-168 594.7 459 66.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-164 582.8 491 60.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-163 579.7 476 61.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 5.2e-157 558.5 326 82.5
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.9e-148 527.7 390 69.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 7.9e-113 411.8 369 59.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-110 404.4 237 81.9
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.3e-107 394.4 312 66.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-100 371.3 292 64.4
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.0e-96 356.3 452 41.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.7e-94 349.7 253 70.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 4.2e-90 336.3 452 40.5
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.6e-87 327.0 462 38.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.5e-82 309.3 201 73.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.0e-76 290.8 232 62.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.2e-70 270.8 172 80.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.4e-61 241.5 135 85.9
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.9e-61 241.1 400 39.2
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 5.2e-56 223.0 166 65.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-52 211.1 166 66.3
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.5e-50 204.1 139 77.0
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-48 198.7 196 53.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.3e-43 181.0 372 31.5
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.0e-43 180.6 131 64.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 8.6e-43 179.1 98 86.7
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.5e-42 178.3 121 66.1
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-39 168.7 249 40.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.2e-36 158.7 89 84.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-30 138.7 124 53.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-30 137.5 93 72.0
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-29 134.8 80 77.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.0e-27 127.5 290 31.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.1e-27 126.7 74 81.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-26 125.2 91 68.1
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 5.6e-26 123.2 100 63.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.3e-14 85.5 60 68.3
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.9e-14 84.3 55 65.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 4.9e-14 83.6 47 78.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.5e-10 71.2 41 75.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 4.3e-10 70.5 35 88.6
TPR.G20506 Trifolium pratense HOM05D004194 ORTHO05D412119 7.4e-10 69.7 66 66.7
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.3e-09 68.9 113 42.5
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 3.7e-09 67.4 38 86.8
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.1e-08 65.9 34 85.3


User provided reference genes

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