Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 6.6e-182 640.6 324 100.0
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 7.4e-149 530.8 295 90.2
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 4.8e-148 528.1 296 90.9
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.5e-144 515.8 295 89.5
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 5.5e-136 488.0 293 85.0
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 3.6e-135 485.3 293 84.0
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 4.6e-135 485.0 294 83.7
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 1.3e-132 476.9 293 82.3
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 3.4e-130 468.8 292 82.2
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 1.3e-129 466.8 292 81.8
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 3.6e-127 458.8 294 79.6
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.7e-121 439.9 296 74.7
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.7e-121 439.9 295 74.9
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 3.2e-120 435.6 295 74.2
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 7.2e-120 434.5 294 74.1
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 9.4e-120 434.1 294 74.1
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.1e-119 433.0 295 72.5
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 6.1e-119 431.4 294 74.8
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 8.0e-119 431.0 296 72.0
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.4e-118 430.3 295 74.2
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 1.8e-118 429.9 294 73.8
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.3e-118 429.5 298 72.5
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.1e-117 427.2 295 72.9
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.1e-117 427.2 296 72.6
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.5e-117 426.8 296 72.0
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.0e-117 426.4 295 72.9
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 2.6e-117 426.0 295 74.2
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 3.3e-117 425.6 294 73.1
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 3.3e-117 425.6 297 70.7
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 5.7e-117 424.9 294 74.5
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 5.7e-117 424.9 296 74.0
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 7.4e-117 424.5 297 73.4
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 9.7e-117 424.1 295 72.5
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 1.3e-116 423.7 294 73.8
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 2.2e-116 422.9 295 73.6
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.2e-116 422.9 296 72.3
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 2.8e-116 422.5 294 72.4
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 3.7e-116 422.2 295 71.2
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 4.8e-116 421.8 298 72.8
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 6.3e-116 421.4 293 73.7
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 8.2e-116 421.0 297 71.4
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 8.2e-116 421.0 297 71.4
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 1.4e-115 420.2 294 74.1
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.4e-115 420.2 295 72.5
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.4e-115 420.2 297 71.0
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.8e-115 419.9 297 72.7
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 1.8e-115 419.9 297 70.7
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 1.8e-115 419.9 295 73.6
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 2.4e-115 419.5 298 71.5
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 2.4e-115 419.5 301 70.8
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 5.3e-115 418.3 298 71.8
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 5.3e-115 418.3 294 73.5
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 7.0e-115 417.9 296 73.6
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 9.1e-115 417.5 296 70.9
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 9.1e-115 417.5 296 71.6
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.2e-114 417.2 293 73.4
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 1.6e-114 416.8 295 72.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 1.6e-114 416.8 294 72.4
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 1.6e-114 416.8 297 72.1
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.6e-114 416.0 294 71.8
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.5e-114 415.6 294 72.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 3.5e-114 415.6 296 72.3
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.5e-114 415.6 297 71.7
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.5e-114 415.6 297 71.7
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 4.5e-114 415.2 295 70.5
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 4.5e-114 415.2 295 70.8
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 4.5e-114 415.2 295 72.5
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 5.9e-114 414.8 297 71.0
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 7.7e-114 414.5 296 72.0
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 7.7e-114 414.5 296 71.6
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 1.0e-113 414.1 299 71.2
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 1.0e-113 414.1 295 70.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.0e-113 414.1 295 71.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 1.3e-113 413.7 297 70.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.3e-113 413.7 296 71.6
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.9e-113 412.5 336 64.6
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.9e-113 412.5 320 67.5
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 3.8e-113 412.1 298 71.1
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 1.1e-112 410.6 298 69.1
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.5e-112 410.2 297 70.4
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 1.5e-112 410.2 294 70.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.9e-112 409.8 336 64.3
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.9e-112 409.8 336 64.6
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.9e-112 409.8 336 64.0
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.9e-112 409.8 297 70.7
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 2.5e-112 409.5 296 70.3
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 3.2e-112 409.1 296 70.3
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 3.2e-112 409.1 296 70.3
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 5.5e-112 408.3 296 71.3
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 7.2e-112 407.9 297 70.4
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 1.2e-111 407.1 297 69.4
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 2.7e-111 406.0 288 71.9
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 2.7e-111 406.0 296 68.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.6e-111 405.6 291 72.5
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 4.7e-111 405.2 265 76.2
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 6.1e-111 404.8 297 69.7
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 1.0e-110 404.1 296 69.6
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 1.8e-110 403.3 298 70.1
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.8e-110 403.3 300 70.7
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 1.8e-110 403.3 293 69.6
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 2.3e-110 402.9 298 69.1
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 2.3e-110 402.9 293 70.0
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 3.0e-110 402.5 299 69.2
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 3.0e-110 402.5 298 69.5
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 6.8e-110 401.4 338 62.7
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 1.2e-109 400.6 293 70.6
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.2e-109 400.6 304 67.1
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 1.5e-109 400.2 297 69.0
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 4.4e-109 398.7 297 68.7
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 5.7e-109 398.3 264 74.2
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 7.5e-109 397.9 297 68.7
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 7.5e-109 397.9 295 69.2
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 7.5e-109 397.9 298 68.8
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 9.7e-109 397.5 297 68.4
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.3e-108 397.1 297 68.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.3e-108 397.1 293 70.0
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.3e-108 397.1 270 73.3
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.2e-108 396.4 295 68.1
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 2.2e-108 396.4 292 69.2
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 2.8e-108 396.0 296 67.6
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 8.3e-108 394.4 252 76.2
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.4e-107 393.7 298 68.5
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.8e-107 393.3 295 68.8
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.8e-107 393.3 293 68.3
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 5.3e-107 391.7 276 71.0
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 5.3e-107 391.7 276 71.0
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 5.3e-107 391.7 276 71.0
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 5.3e-107 391.7 319 65.2
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 9.1e-107 391.0 297 68.7
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 2.0e-106 389.8 269 71.7
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 2.7e-106 389.4 319 64.6
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 7.7e-106 387.9 287 69.7
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.7e-105 386.7 261 75.1
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 6.5e-105 384.8 293 67.6
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.2e-104 382.5 273 68.9
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.2e-104 382.5 284 69.7
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 4.2e-104 382.1 284 69.4
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 2.1e-103 379.8 293 67.2
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.7e-103 379.4 284 70.1
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 1.8e-102 376.7 293 65.9
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.6e-101 372.9 295 64.1
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 2.6e-101 372.9 297 66.0
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 4.5e-98 362.1 258 66.7
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.2e-96 355.5 259 67.2
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 9.5e-96 354.4 247 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 1.2e-95 354.0 243 69.5
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.7e-95 352.1 271 65.3
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 8.0e-95 351.3 259 73.0
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 1.0e-94 350.9 254 68.5
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 1.2e-93 347.4 298 60.1
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 1.1e-91 340.9 203 80.8
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 2.4e-91 339.7 202 81.2
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.6e-87 327.0 237 66.2
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 1.9e-83 313.5 250 61.6
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 2.1e-74 283.5 200 72.5
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 9.5e-72 274.6 225 66.2
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.2e-69 267.7 156 84.0
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 3.7e-68 262.7 247 54.7
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 4.1e-67 259.2 309 51.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 7.8e-66 255.0 147 83.7
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 5.6e-64 248.8 162 74.7
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 3.3e-56 223.0 144 77.8
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 5.6e-56 222.2 147 75.5
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 7.6e-53 211.8 185 58.4
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 4.5e-45 186.0 121 73.6
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 5.8e-45 185.7 153 64.7
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 1.3e-44 184.5 186 54.8
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 8.4e-44 181.8 175 58.3
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 5.3e-38 162.5 150 57.3
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 2.2e-28 130.6 187 37.4
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 2.5e-24 117.1 75 74.7
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.4e-22 111.3 149 47.7
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 1.0e-20 105.1 73 71.2
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 5.5e-19 99.4 72 66.7
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.7e-12 77.8 49 79.6
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 1.6e-10 71.2 37 75.7
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.1e-10 69.3 57 63.2
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.1e-10 69.3 57 63.2
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 2.3e-09 67.4 37 73.0
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 2.2e-07 60.8 87 49.4
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 8.2e-07 58.9 50 66.0
CSS0042870 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 9.1e-06 55.5 48 64.6


User provided reference genes

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