Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 0.0e+00 1308.9 659 100.0
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 0.0e+00 1147.9 659 89.2
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 0.0e+00 1128.6 658 87.1
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 0.0e+00 1105.1 660 85.8
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 1.3e-301 1039.3 658 79.8
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 8.4e-301 1036.6 659 80.1
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.4e-300 1035.0 661 80.0
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 1.6e-299 1032.3 661 79.9
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.4e-294 1014.6 657 79.3
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 7.9e-291 1003.4 662 76.6
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.5e-281 972.6 661 75.3
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 3.4e-278 961.4 672 74.0
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.6e-238 829.7 661 64.6
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 5.2e-234 814.7 658 63.8
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 8.9e-234 813.9 668 63.2
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 7.8e-230 800.8 662 62.8
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 3.9e-229 798.5 657 62.4
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 9.5e-228 793.9 662 62.1
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.4e-226 790.0 660 61.2
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 3.1e-226 788.9 659 61.3
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 5.8e-225 784.6 659 61.9
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 1.1e-223 780.4 663 61.7
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.1e-223 780.4 659 62.4
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 9.2e-223 777.3 666 60.1
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 5.1e-221 771.5 657 60.9
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 5.1e-221 771.5 663 60.5
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 6.6e-221 771.2 660 59.5
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-220 770.0 656 61.0
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.9e-220 769.6 657 60.9
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 4.3e-220 768.5 661 61.3
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.1e-218 763.8 651 61.6
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 3.1e-218 762.3 660 61.1
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 3.1e-218 762.3 660 60.9
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.5e-217 760.0 661 61.0
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.5e-217 760.0 656 59.5
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.4e-215 753.4 657 59.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 7.1e-215 751.1 663 59.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 9.2e-215 750.7 660 60.2
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 1.3e-213 746.9 665 58.6
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 6.6e-213 744.6 666 59.8
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.6e-212 741.5 633 61.0
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 3.6e-211 738.8 658 60.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.1e-210 735.7 658 58.5
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 5.2e-210 734.9 665 58.0
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.2e-210 734.9 666 59.2
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.2e-208 729.6 635 60.0
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.9e-208 728.4 676 57.0
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 4.9e-208 728.4 676 57.0
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 4.2e-207 725.3 914 47.0
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 3.0e-205 719.2 754 54.2
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 6.6e-205 718.0 658 57.4
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 3.6e-203 712.2 658 56.2
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 3.6e-203 712.2 664 57.7
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.1e-202 710.7 657 56.8
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.1e-202 710.7 664 57.4
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 2.4e-202 709.5 661 57.5
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 3.1e-202 709.1 663 57.3
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 4.0e-202 708.8 682 56.6
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 5.3e-202 708.4 669 57.2
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 6.9e-202 708.0 672 57.1
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 7.6e-201 704.5 664 56.9
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 2.9e-200 702.6 662 55.9
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 6.4e-200 701.4 667 57.7
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 2.1e-198 696.4 672 54.6
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 2.8e-195 686.0 662 56.0
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.1e-194 684.1 657 55.6
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 1.7e-192 676.8 656 55.9
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 8.4e-192 674.5 657 55.3
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 8.4e-192 674.5 662 54.4
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 1.9e-191 673.3 739 50.5
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 1.9e-191 673.3 655 56.3
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 4.2e-191 672.2 657 55.3
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 4.2e-191 672.2 659 55.1
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 4.2e-191 672.2 668 54.8
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 7.1e-191 671.4 657 55.3
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 7.1e-191 671.4 639 56.7
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 9.3e-191 671.0 655 55.7
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 2.1e-190 669.8 655 54.8
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 2.1e-190 669.8 658 56.1
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 2.7e-190 669.5 641 55.9
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 4.6e-190 668.7 662 54.7
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 7.9e-190 667.9 661 54.0
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 3.9e-189 665.6 655 55.7
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.9e-189 665.6 666 54.8
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 5.1e-189 665.2 631 55.6
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 4.0e-186 655.6 657 54.3
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 4.0e-186 655.6 586 59.2
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 6.0e-182 641.7 657 53.6
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.3e-181 639.8 655 51.6
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.9e-180 636.7 654 51.7
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 4.8e-179 632.1 658 51.1
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.1e-178 630.9 656 51.4
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 6.0e-174 615.1 716 48.7
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 9.0e-170 601.3 631 51.0
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 1.2e-169 600.9 672 49.4
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 8.8e-165 584.7 662 48.2
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 3.4e-161 572.8 677 49.8
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.8e-157 560.5 663 47.7
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.4e-146 524.2 667 45.3
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 7.7e-145 518.5 555 51.7
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 3.8e-144 516.2 707 41.4
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 9.4e-143 511.5 492 55.1
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 1.4e-138 497.7 655 43.2
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 9.5e-127 458.4 296 78.7
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 7.8e-121 438.7 523 47.0
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 2.0e-108 397.5 544 44.1
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 5.2e-93 346.3 721 32.5
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.2e-81 308.5 529 38.0
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 6.6e-80 302.8 661 33.0
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 5.3e-77 293.1 378 45.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 4.5e-76 290.0 656 30.8
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.3e-58 229.2 162 72.8
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 1.3e-46 192.2 469 31.1
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.5e-42 177.9 146 63.7
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 3.9e-40 170.6 165 53.3
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 7.0e-37 159.8 137 62.0
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 5.9e-36 156.8 403 32.0
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 7.0e-29 133.3 96 70.8
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.9e-26 125.2 159 50.3
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 8.8e-24 116.3 199 36.7
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 2.7e-20 104.8 109 49.5
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.7e-17 94.7 58 69.0
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 6.8e-16 90.1 62 66.1
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.4e-13 82.4 86 45.3
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 1.7e-11 75.5 50 72.0
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.9e-10 72.0 67 52.2
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.8e-09 68.2 60 51.7
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 1.3e-06 59.3 51 56.9
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.3e-06 59.3 37 78.4
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.4e-06 57.0 37 75.7


User provided reference genes

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