Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.2e-27 125.9 72 100.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 9.3e-20 99.8 65 84.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 3.3e-17 91.3 70 81.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 8.2e-16 86.7 48 91.7
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 6.9e-15 83.6 50 84.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 4.5e-14 80.9 49 81.6
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 5.0e-13 77.4 47 83.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.1e-12 76.3 47 80.9
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 2.5e-12 75.1 61 67.2
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.6e-11 72.4 47 76.6
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.7e-11 71.6 64 65.6
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 7.9e-11 70.1 53 67.9
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 1.0e-10 69.7 49 71.4
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.9e-10 67.8 52 63.5
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 8.8e-10 66.6 49 67.3
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 8.8e-10 66.6 49 67.3
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 8.8e-10 66.6 49 67.3
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 8.8e-10 66.6 49 67.3
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 8.8e-10 66.6 67 56.7
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.1e-09 66.2 49 63.3
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.1e-09 66.2 53 62.3
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.5e-09 65.9 48 66.7
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.0e-09 65.5 65 55.4
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.0e-09 65.5 46 69.6
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 3.3e-09 64.7 48 66.7
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.3e-09 64.7 49 65.3
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.3e-09 64.7 49 65.3
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 3.3e-09 64.7 48 66.7
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 5.7e-09 63.9 44 70.5
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 5.7e-09 63.9 47 72.3
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 5.7e-09 63.9 61 57.4
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 7.4e-09 63.5 44 70.5
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 7.4e-09 63.5 68 51.5
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 9.7e-09 63.2 48 66.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.3e-08 62.8 69 47.8
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.3e-08 62.8 49 65.3
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.3e-08 62.8 49 65.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.3e-08 62.8 65 53.8
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.3e-08 62.8 48 66.7
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.7e-08 62.4 54 59.3
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.7e-08 62.4 66 51.5
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.7e-08 62.4 71 49.3
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 1.7e-08 62.4 62 53.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.7e-08 62.4 47 70.2
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.7e-08 62.4 53 56.6
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.2e-08 62.0 58 56.9
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.2e-08 62.0 47 66.0
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.2e-08 62.0 49 61.2
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.2e-08 62.0 58 56.9
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.8e-08 61.6 50 64.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 3.7e-08 61.2 60 56.7
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.7e-08 61.2 48 64.6
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 3.7e-08 61.2 50 60.0
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 4.8e-08 60.8 67 50.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.8e-08 60.8 76 48.7
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.8e-08 60.8 50 62.0
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.8e-08 60.8 72 51.4
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 4.8e-08 60.8 41 68.3
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 4.8e-08 60.8 68 54.4
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.3e-08 60.5 50 62.0
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 8.2e-08 60.1 43 67.4
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.1e-07 59.7 64 51.6
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.1e-07 59.7 48 62.5
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-07 59.7 66 51.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.4e-07 59.3 66 48.5
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.4e-07 59.3 67 53.7
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.4e-07 59.3 50 60.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.8e-07 58.9 61 54.1
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.8e-07 58.9 50 64.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.8e-07 58.9 49 59.2
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.8e-07 58.9 65 49.2
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 2.4e-07 58.5 65 52.3
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 3.1e-07 58.2 48 58.3
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 3.1e-07 58.2 48 60.4
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 5.3e-07 57.4 63 52.4
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 6.9e-07 57.0 70 48.6
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 6.9e-07 57.0 66 53.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.2e-06 56.2 53 52.8
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.5e-06 55.8 43 65.1
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.5e-06 55.8 66 48.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.0e-06 55.5 68 51.5
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 4.5e-06 54.3 68 47.1
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.9e-06 53.9 49 57.1


User provided reference genes

Program Settings