Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1622.4 793 100.0
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1469.5 796 91.0
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1456.8 795 89.9
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1441.0 795 89.2
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1391.7 789 86.1
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1369.0 777 86.1
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1360.9 792 84.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1356.3 751 87.4
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1348.6 749 86.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1345.1 792 83.5
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1272.7 750 80.5
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1270.0 795 77.2
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1265.8 772 78.0
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1265.4 777 78.1
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1263.1 771 79.0
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1257.3 778 77.9
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 777 76.6
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 752 79.3
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1254.2 773 77.7
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1248.8 762 77.8
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1248.4 802 75.2
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1243.8 746 79.1
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 770 76.9
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1240.3 802 74.7
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1239.9 762 77.8
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1238.0 780 77.4
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1231.9 775 76.5
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 782 76.3
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1226.8 703 84.4
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1226.5 767 76.9
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1224.5 743 77.5
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1221.5 798 74.9
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 746 75.9
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 767 76.8
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1218.4 809 73.5
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1216.1 810 73.0
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 780 75.3
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1209.9 805 72.5
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 778 74.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 749 75.8
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1200.3 801 72.8
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1199.5 749 74.8
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1198.3 765 73.5
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 767 75.9
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1196.0 751 75.2
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1195.6 763 75.1
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1194.5 771 74.3
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1192.2 782 73.5
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 745 75.4
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1189.1 748 75.9
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 739 75.8
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1187.2 827 70.4
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1186.8 774 72.9
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1183.7 786 71.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1182.5 779 73.2
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1181.0 779 74.2
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1180.6 771 72.5
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1179.5 763 73.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 769 72.7
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1176.0 777 72.3
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1174.8 749 73.7
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1172.9 770 73.0
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 769 72.6
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 776 72.4
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1171.0 769 73.0
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1170.6 770 72.7
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1169.5 769 72.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1168.7 775 73.3
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 767 73.3
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1166.0 769 72.2
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 746 73.3
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1158.7 774 70.9
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1158.3 774 72.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 793 70.5
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1149.8 692 79.8
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1139.8 778 70.6
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1139.4 830 68.0
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1131.7 769 70.4
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1124.8 767 72.2
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1114.8 764 69.8
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1111.7 686 76.5
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1098.6 753 71.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1098.2 761 70.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1087.4 811 65.4
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 5.4e-312 1074.7 695 72.9
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.8e-310 1068.9 816 64.8
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 7.0e-310 1067.0 663 77.2
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 1.6e-309 1065.8 757 69.2
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 1.0e-305 1053.1 685 73.1
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 7.8e-301 1036.9 741 66.9
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-298 1027.3 609 82.4
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.1e-294 1016.5 625 78.1
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.4e-294 1015.4 859 61.0
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 8.6e-284 980.3 741 61.4
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.4e-281 973.0 749 61.3
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.6e-274 949.5 750 59.5
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.4e-254 883.2 635 66.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 1.2e-248 863.6 623 65.8
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.3e-239 833.6 689 61.7
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-225 786.9 678 55.5
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 5.5e-214 748.4 523 68.5
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 5.6e-166 589.0 782 41.9
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 8.1e-149 531.9 354 66.7
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 7.1e-145 518.8 603 49.3
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 5.3e-124 449.5 298 69.5
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 7.0e-100 369.4 289 69.9
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 3.1e-92 344.0 264 62.9
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 4.2e-89 333.6 225 75.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 3.5e-83 313.9 259 65.3
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.2e-61 241.5 146 76.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.1e-52 212.6 138 73.9
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 2.5e-49 201.4 120 76.7
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.7e-40 170.6 127 63.0
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 4.9e-37 160.6 94 74.5
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.2e-28 131.0 157 47.1
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 8.7e-26 123.2 94 61.7
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 6.2e-24 117.1 109 49.5
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 4.2e-20 104.4 105 55.2
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.3e-18 98.6 60 76.7
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.5e-17 95.9 48 91.7
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.9e-17 95.5 56 82.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.2e-12 78.2 43 79.1
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 3.5e-11 74.7 50 78.0
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.1e-08 65.5 40 77.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 2.4e-07 62.0 37 78.4


User provided reference genes

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