Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 3.5e-147 525.0 279 100.0
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 3.0e-130 468.8 280 91.4
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 6.0e-91 338.2 275 73.5
Psat0s1262g0280 Pisum sativum HOM05D010736 ORTHO05D010111 4.1e-71 272.3 232 72.0
Psat0s1262g0080 Pisum sativum HOM05D010736 ORTHO05D010111 1.2e-46 191.0 232 54.3
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 7.5e-41 171.8 207 52.2
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 6.6e-37 158.7 276 48.2
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 7.0e-31 138.7 282 42.6
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 3.6e-27 126.3 255 36.9
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 2.3e-26 123.6 149 53.7
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 1.2e-17 94.7 277 32.9
Lalb_Chr09g0321241 Lupinus albus HOM05D010736 ORTHO05D010111 7.5e-17 92.0 152 38.8
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 1.3e-16 91.3 86 50.0
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 1.3e-16 91.3 86 50.0
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 6.4e-16 89.0 112 42.0
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 6.4e-16 89.0 112 42.0
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 1.2e-14 84.7 55 65.5
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 2.7e-14 83.6 156 37.2
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 7.8e-14 82.0 124 41.1
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 2.8e-11 73.6 170 30.6
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 2.8e-11 73.6 71 49.3
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 3.6e-11 73.2 64 53.1
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 6.2e-11 72.4 80 43.8
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 1.1e-10 71.6 173 31.2
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 5.2e-10 69.3 51 54.9
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 1.2e-09 68.2 132 35.6
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 1.2e-09 68.2 132 35.6
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 1.2e-09 68.2 110 36.4
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 1.2e-09 68.2 182 32.4
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.5e-09 67.8 110 36.4
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 2.0e-09 67.4 60 48.3
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 2.0e-09 67.4 55 50.9
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 2.6e-09 67.0 114 36.0
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 5.8e-09 65.9 159 31.4
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 5.8e-09 65.9 54 48.1
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 5.8e-09 65.9 122 32.0
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 7.6e-09 65.5 54 48.1
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 7.6e-09 65.5 54 48.1
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 9.9e-09 65.1 167 37.1
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 1.3e-08 64.7 180 28.9
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 1.7e-08 64.3 130 32.3
Gohir.A03G209700 Gossypium hirsutum HOM05D000174 ORTHO05D001526 2.2e-08 63.9 84 40.5
Lalb_Chr05g0211881 Lupinus albus HOM05D010736 ORTHO05D010111 2.2e-08 63.9 144 35.4
Gohir.D02G231400 Gossypium hirsutum HOM05D000174 ORTHO05D001526 3.8e-08 63.2 84 40.5
Gorai.005G259000 Gossypium raimondii HOM05D000174 ORTHO05D001526 3.8e-08 63.2 84 40.5
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 6.4e-08 62.4 90 42.2
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 6.4e-08 62.4 42 61.9
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 8.4e-08 62.0 142 32.4
RcHm_v2.0_Chr6g0280711 Rosa chinensis HOM05D000174 ORTHO05D001526 8.4e-08 62.0 65 49.2
PSO210G1674 Papaver somniferum HOM05D000174 ORTHO05D001526 1.1e-07 61.6 70 42.9
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 1.4e-07 61.2 162 28.4
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 1.4e-07 61.2 140 32.9
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 1.4e-07 61.2 140 32.9
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 1.4e-07 61.2 272 27.2
Actinidia20568 Actinidia chinensis HOM05D000174 ORTHO05D001526 1.9e-07 60.8 95 41.1
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 1.9e-07 60.8 142 31.7
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 2.4e-07 60.5 108 36.1
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 2.4e-07 60.5 173 30.6
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 3.2e-07 60.1 96 35.4
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 3.2e-07 60.1 157 34.4
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 3.2e-07 60.1 157 34.4
CARHR243600 Cardamine hirsuta HOM05D000174 ORTHO05D001526 3.2e-07 60.1 46 58.7
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 3.2e-07 60.1 56 48.2
Duzib132G0848 Durio zibethinus HOM05D000174 ORTHO05D001526 4.1e-07 59.7 80 37.5
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 5.4e-07 59.3 107 34.6
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 5.4e-07 59.3 142 31.0
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 5.4e-07 59.3 41 56.1
AL7G15890 Arabidopsis lyrata HOM05D000174 ORTHO05D001526 7.1e-07 58.9 43 60.5
Duzib248G0614 Durio zibethinus HOM05D000174 ORTHO05D001526 7.1e-07 58.9 80 38.8
AT4G35280 Arabidopsis thaliana HOM05D000174 ORTHO05D001526 9.2e-07 58.5 46 56.5
arahy.Tifrunner.gnm1.ann1.DV6FW6 Arachis hypogaea HOM05D000174 ORTHO05D001526 9.2e-07 58.5 96 34.4
Gohir.A01G175000 Gossypium hirsutum HOM05D000174 ORTHO05D001526 9.2e-07 58.5 78 39.7
Gohir.D01G166100 Gossypium hirsutum HOM05D000174 ORTHO05D001526 9.2e-07 58.5 78 39.7
Gorai.002G206600 Gossypium raimondii HOM05D000174 ORTHO05D001526 9.2e-07 58.5 78 39.7
Lalb_Chr22g0352391 Lupinus albus HOM05D000174 ORTHO05D001526 9.2e-07 58.5 88 38.6
Lalb_Chr22g0352401 Lupinus albus HOM05D000174 ORTHO05D001526 9.2e-07 58.5 88 38.6
Oeu015527.1 Olea europaea HOM05D000174 ORTHO05D001526 9.2e-07 58.5 106 34.9
Oeu015529.1 Olea europaea HOM05D000174 ORTHO05D001526 9.2e-07 58.5 106 34.9
Ciclev10030233m.g Citrus clementina HOM05D000174 ORTHO05D001526 1.2e-06 58.2 59 47.5
Duzib052G0399 Durio zibethinus HOM05D000174 ORTHO05D001526 1.2e-06 58.2 80 38.8
Lsat_1_v5_gn_8_121041 Lactuca sativa HOM05D000174 ORTHO05D001526 1.2e-06 58.2 68 48.5
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 1.6e-06 57.8 115 34.8
arahy.Tifrunner.gnm1.ann1.PC1F1T Arachis hypogaea HOM05D000174 ORTHO05D001526 1.6e-06 57.8 65 41.5
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.6e-06 57.8 141 31.9
Sc08g0002310 Simmondsia chinensis HOM05D000174 ORTHO05D001526 1.6e-06 57.8 71 43.7
SGA_v2.0_scaffold98G29296 Striga asiatica HOM05D000174 ORTHO05D001526 1.6e-06 57.8 45 55.6
Zm00001eb199290 Zea mays HOM05D000174 ORTHO05D001526 1.6e-06 57.8 58 50.0
CANSAT56G2339 Cannabis sativa HOM05D000174 ORTHO05D001526 2.1e-06 57.4 61 45.9
CARHR293490 Cardamine hirsuta HOM05D000174 ORTHO05D001526 2.1e-06 57.4 77 40.3
Nn6g31718 Nelumbo nucifera HOM05D000174 ORTHO05D001526 2.1e-06 57.4 136 33.1
Peaxi162Scf00263g00147 Petunia axillaris HOM05D000174 ORTHO05D001526 2.1e-06 57.4 48 54.2
QL11p055621 Quercus lobata HOM05D000174 ORTHO05D001526 2.1e-06 57.4 67 46.3
QL11p055917 Quercus lobata HOM05D000174 ORTHO05D001526 2.1e-06 57.4 67 46.3
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 2.1e-06 57.4 59 49.2
BcaNung02386 Brassica carinata HOM05D000174 ORTHO05D001526 2.7e-06 57.0 112 36.6
C07p61070 Brassica napus HOM05D000174 ORTHO05D001526 2.7e-06 57.0 112 36.6
BolC7t46532H Brassica oleracea HOM05D000174 ORTHO05D001526 2.7e-06 57.0 112 36.6
Cc10_g04030 Coffea canephora HOM05D000174 ORTHO05D001526 2.7e-06 57.0 43 58.1
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 2.7e-06 57.0 193 28.0
HanXRQChr12g0374431 Helianthus annuus HOM05D000174 ORTHO05D001526 2.7e-06 57.0 102 35.3
Rhsim11G0197100 Rhododendron simsii HOM05D000174 ORTHO05D001526 2.7e-06 57.0 48 54.2
Sp7g33060 Schrenkiella parvula HOM05D000174 ORTHO05D001526 2.7e-06 57.0 57 47.4
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 2.7e-06 57.0 58 50.0
Nitab4.5_0000032g0420 Nicotiana tabacum HOM05D000174 ORTHO05D001526 3.5e-06 56.6 46 54.3
Nitab4.5_0007754g0010 Nicotiana tabacum HOM05D000174 ORTHO05D001526 3.5e-06 56.6 46 54.3
Potri.004G205300 Populus trichocarpa HOM05D000174 ORTHO05D001526 3.5e-06 56.6 47 53.2
Potri.009G166200 Populus trichocarpa HOM05D000174 ORTHO05D001526 3.5e-06 56.6 47 53.2
Sabra04G0138600 Salix brachista HOM05D000174 ORTHO05D001526 3.5e-06 56.6 61 47.5
Aa31LG2G14820 Aethionema arabicum HOM05D000174 ORTHO05D001526 4.6e-06 56.2 43 55.8
Cpa.g.sc20.205 Carica papaya HOM05D000174 ORTHO05D001526 4.6e-06 56.2 99 38.4
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 4.6e-06 56.2 212 25.9
FAN15G2497 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.6e-06 56.2 63 47.6
FAN27G0184 Fragaria x ananassa HOM05D000174 ORTHO05D001526 4.6e-06 56.2 42 59.5
PGR142G1089 Punica granatum HOM05D000174 ORTHO05D001526 4.6e-06 56.2 90 36.7
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 4.6e-06 56.2 197 25.9
PGSC0003DMG401000796 Solanum tuberosum HOM05D000174 ORTHO05D001526 4.6e-06 56.2 89 39.3
Thecc.02G044700 Theobroma cacao HOM05D000174 ORTHO05D001526 4.6e-06 56.2 108 36.1
A03p63500 Brassica napus HOM05D000174 ORTHO05D001526 6.0e-06 55.8 112 36.6
BraA03t15420Z Brassica rapa HOM05D000174 ORTHO05D001526 6.0e-06 55.8 57 47.4
CAN.G62.50 Capsicum annuum HOM05D000174 ORTHO05D001526 6.0e-06 55.8 41 58.5
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 6.0e-06 55.8 59 49.2
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 6.0e-06 55.8 41 58.5
HPP92_014994 Vanilla planifolia HOM05D000174 ORTHO05D001526 6.0e-06 55.8 45 55.6
CANSAT56G1055 Cannabis sativa HOM05D000174 ORTHO05D001526 7.8e-06 55.5 53 47.2
AUR62033207 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.8e-06 55.5 39 61.5
AUR62033209 Chenopodium quinoa HOM05D000174 ORTHO05D001526 7.8e-06 55.5 39 61.5
MD05G1134500 Malus domestica HOM05D000174 ORTHO05D001526 7.8e-06 55.5 47 53.2
Manes.04G008800 Manihot esculenta HOM05D000174 ORTHO05D001526 7.8e-06 55.5 52 48.1
Manes.08G058500 Manihot esculenta HOM05D000174 ORTHO05D001526 7.8e-06 55.5 47 51.1
Os02g0293900 Oryza sativa ssp. japonica HOM05D000174 ORTHO05D001526 7.8e-06 55.5 40 60.0


User provided reference genes

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