Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.6e-308 1061.2 528 100.0
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.3e-280 969.1 527 91.1
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.1e-269 932.9 527 88.4
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 8.9e-269 929.9 526 89.4
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 5.2e-261 904.0 526 86.7
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 9.9e-260 899.8 527 86.7
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.4e-258 896.0 525 86.5
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.3e-251 872.8 597 77.1
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 3.5e-241 838.2 529 80.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 5.1e-240 834.3 530 80.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 5.1e-240 834.3 530 80.6
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.9e-235 817.8 527 79.1
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 7.9e-233 810.4 529 77.5
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 6.7e-232 807.4 531 76.5
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.8e-230 802.0 462 84.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.7e-230 801.6 521 78.5
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.4e-229 799.7 459 85.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.8e-229 799.3 462 85.5
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 2.6e-228 795.4 515 78.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.3e-227 793.1 530 76.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 1.7e-227 792.7 535 77.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.2e-226 788.1 530 76.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.2e-225 786.6 533 76.5
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 7.9e-225 783.9 517 77.2
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.0e-224 783.5 535 76.1
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 6.7e-224 780.8 550 73.5
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 4.3e-223 778.1 562 72.6
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 7.4e-223 777.3 466 82.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.3e-222 776.5 526 76.4
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.1e-222 775.8 523 75.3
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.7e-222 775.0 529 75.0
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 8.2e-222 773.9 534 74.7
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.1e-221 773.5 522 75.3
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.3e-221 771.2 533 75.0
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 9.0e-221 770.4 475 81.1
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.5e-220 769.6 537 72.8
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.0e-220 769.2 526 73.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 5.8e-220 767.7 533 73.4
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.6e-220 767.3 486 78.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.6e-220 767.3 536 75.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 7.6e-220 767.3 537 73.4
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.2e-219 765.8 534 72.8
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.8e-219 765.0 529 73.7
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.5e-219 764.2 527 74.6
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 6.5e-219 764.2 529 73.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 6.5e-219 764.2 458 81.9
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.4e-219 763.8 527 74.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 8.4e-219 763.8 441 84.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.1e-218 763.5 533 73.5
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.1e-218 760.8 538 74.2
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.6e-217 759.6 463 80.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 3.5e-217 758.4 540 73.9
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 4.6e-217 758.1 528 74.1
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 6.0e-217 757.7 527 74.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.3e-216 756.5 527 73.8
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.3e-216 756.5 526 73.0
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.8e-216 756.1 529 72.8
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 5.1e-216 754.6 461 80.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.9e-215 752.7 502 76.5
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 4.3e-215 751.5 479 78.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-214 749.6 488 77.7
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 4.8e-214 748.0 480 77.7
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.6e-212 742.3 461 79.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.6e-212 740.7 488 76.4
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.0e-211 740.3 529 72.4
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.3e-211 740.0 435 83.4
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 5.5e-210 734.6 530 71.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.5e-210 734.6 461 78.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 7.2e-210 734.2 528 70.6
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.1e-209 732.6 422 84.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.1e-209 732.6 440 80.7
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 7.9e-209 730.7 437 80.5
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.0e-208 730.3 480 75.4
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.0e-208 730.3 461 77.7
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.0e-208 730.3 507 74.0
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.4e-208 729.9 496 72.8
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.8e-208 729.6 422 84.1
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.3e-208 729.2 437 80.5
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.3e-208 729.2 461 78.3
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 6.7e-208 727.6 525 70.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.5e-207 725.7 496 74.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.3e-207 725.3 529 70.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.2e-206 722.6 438 81.1
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 3.7e-206 721.8 514 71.2
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 6.3e-206 721.1 435 80.5
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.1e-205 720.3 523 70.4
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 6.9e-205 717.6 531 69.7
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 6.9e-205 717.6 460 76.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 9.1e-205 717.2 422 82.5
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.2e-204 716.8 435 80.2
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-204 716.5 481 74.6
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.0e-204 716.1 455 77.8
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.3e-203 713.4 533 69.4
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.8e-203 711.8 422 82.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 5.0e-203 711.4 495 72.1
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 5.0e-203 711.4 533 69.6
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 5.0e-203 711.4 506 72.1
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 5.0e-203 711.4 436 78.7
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 2.1e-201 706.1 483 73.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 3.6e-201 705.3 533 69.0
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.1e-201 704.5 455 74.3
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.9e-201 704.1 431 78.4
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.4e-200 703.4 550 66.7
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.3e-200 702.6 546 67.4
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 5.1e-200 701.4 425 80.7
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.1e-199 700.3 434 78.6
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.1e-197 693.7 453 75.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 9.1e-197 690.6 474 73.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.2e-196 690.3 541 67.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.0e-195 687.2 488 72.5
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 3.5e-188 662.1 476 69.3
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.9e-187 659.1 394 81.7
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.5e-187 657.9 399 81.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.5e-186 654.8 449 71.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 4.7e-185 651.7 428 72.7
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.3e-183 645.6 461 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 4.2e-178 628.6 434 70.0
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.2e-177 627.1 503 63.2
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.8e-168 594.7 363 79.6
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.1e-157 560.8 326 83.7
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.5e-156 555.8 330 84.5
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 4.1e-149 532.3 406 69.0
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.6e-146 521.9 302 84.4
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 7.3e-146 521.5 428 61.2
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 9.5e-146 521.2 326 78.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.7e-142 510.4 432 60.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.4e-141 505.4 431 58.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-139 500.7 297 84.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 3.0e-139 499.6 380 69.2
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.2e-129 465.3 297 79.1
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.0e-124 448.7 353 68.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.3e-122 442.6 273 78.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 5.6e-122 442.2 426 55.9
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.6e-111 406.8 442 46.4
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 3.3e-106 389.8 238 83.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.7e-95 352.1 430 44.2
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.6e-82 310.5 175 83.4
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.7e-76 290.4 355 44.2
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 7.0e-56 222.6 247 56.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-54 218.4 131 80.2
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.7e-54 218.0 178 66.9
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.0e-47 194.5 182 53.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.8e-44 184.1 120 70.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 6.8e-43 179.5 117 72.6
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-42 178.3 131 69.5
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-38 165.6 90 90.0
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.8e-35 154.8 90 78.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 9.2e-32 142.5 107 66.4
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-31 142.1 128 57.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 4.0e-27 127.1 129 53.5
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 2.6e-26 124.4 129 52.7
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 2.6e-26 124.4 81 74.1
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 7.6e-26 122.9 149 49.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 9.9e-26 122.5 140 50.7
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.4e-24 118.6 78 70.5
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 7.8e-23 112.8 130 50.0
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-22 112.1 114 53.5
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.3e-22 112.1 114 53.5
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 2.1e-20 104.8 258 31.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 5.2e-19 100.1 82 65.9
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.2e-17 94.7 53 86.8


User provided reference genes

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