Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g102800 Pisum sativum HOM05D038693 ORTHO05D320111 5.2e-99 364.4 184 100.0
Psat7g252480 Pisum sativum HOM05D038693 ORTHO05D321642 3.2e-24 115.9 57 94.7
Psat7g252440 Pisum sativum HOM05D038693 ORTHO05D327489 7.2e-24 114.8 56 94.6
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 5.7e-13 78.6 101 47.5
Psat5g155520 Pisum sativum HOM05D004318 ORTHO05D005690 1.7e-12 77.0 39 97.4
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 9.1e-11 71.2 137 38.7
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 1.2e-10 70.9 137 38.7
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 1.2e-10 70.9 137 38.7
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 2.0e-10 70.1 137 38.0
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 4.5e-10 68.9 138 37.0
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 4.5e-10 68.9 138 37.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 7.7e-10 68.2 117 40.2
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 7.7e-10 68.2 137 37.2
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 1.7e-09 67.0 138 36.2
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 2.2e-09 66.6 138 35.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 2.2e-09 66.6 137 35.8
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 2.2e-09 66.6 138 35.5
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 2.2e-09 66.6 138 35.5
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 3.8e-09 65.9 137 36.5
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 3.8e-09 65.9 137 36.5
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 5.0e-09 65.5 138 35.5
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.5e-09 65.1 138 35.5
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.5e-09 65.1 138 35.5
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 8.5e-09 64.7 138 34.8
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 8.5e-09 64.7 136 34.6
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 1.1e-08 64.3 138 34.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 1.1e-08 64.3 136 35.3
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 1.1e-08 64.3 138 34.8
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 1.5e-08 63.9 138 35.5
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 1.5e-08 63.9 138 34.1
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 1.5e-08 63.9 138 34.1
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.5e-08 63.9 138 34.1
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 1.9e-08 63.5 143 32.9
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 1.9e-08 63.5 143 33.6
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 1.9e-08 63.5 138 34.8
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 2.5e-08 63.2 138 34.1
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 2.5e-08 63.2 137 36.5
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 2.5e-08 63.2 137 36.5
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 2.5e-08 63.2 138 34.1
Glyma.08G252650 Glycine max HOM05D003926 ORTHO05D005273 2.5e-08 63.2 137 36.5
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 2.5e-08 63.2 138 34.1
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 3.2e-08 62.8 138 34.8
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 3.2e-08 62.8 138 34.8
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 3.2e-08 62.8 138 34.1
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 3.2e-08 62.8 138 34.8
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 4.2e-08 62.4 138 34.1
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 4.2e-08 62.4 138 34.1
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 4.2e-08 62.4 138 34.1
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 5.5e-08 62.0 137 35.8
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 5.5e-08 62.0 137 35.8
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 5.5e-08 62.0 138 34.1
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 7.2e-08 61.6 138 33.3
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 7.2e-08 61.6 138 33.3
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 7.2e-08 61.6 143 32.2
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 7.2e-08 61.6 138 33.3
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 7.2e-08 61.6 136 34.6
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 9.4e-08 61.2 143 32.9
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 9.4e-08 61.2 138 32.6
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 9.4e-08 61.2 137 35.0
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 9.4e-08 61.2 138 33.3
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 34.1
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 33.3
Cpa.g.sc14.238 Carica papaya HOM05D003926 ORTHO05D005273 1.2e-07 60.8 136 32.4
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 34.1
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 34.1
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 34.1
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 1.2e-07 60.8 138 33.3
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 1.6e-07 60.5 138 32.6
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 1.6e-07 60.5 138 33.3
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.6e-07 60.5 143 32.9
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 1.6e-07 60.5 135 34.8
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 1.6e-07 60.5 136 33.1
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 1.6e-07 60.5 138 33.3
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 1.6e-07 60.5 138 32.6
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 1.6e-07 60.5 143 32.9
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 1.6e-07 60.5 138 34.1
BcaC05g30340 Brassica carinata HOM05D003926 ORTHO05D005273 2.1e-07 60.1 138 32.6
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 2.1e-07 60.1 138 33.3
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 2.1e-07 60.1 136 33.8
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 2.7e-07 59.7 140 32.1
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 3.6e-07 59.3 138 34.1
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 3.6e-07 59.3 138 32.6
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 4.7e-07 58.9 138 33.3
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 4.7e-07 58.9 138 32.6
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 6.1e-07 58.5 138 33.3
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 6.1e-07 58.5 138 33.3
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 8.0e-07 58.2 138 31.9
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 1.0e-06 57.8 143 31.5
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 1.0e-06 57.8 138 33.3
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 1.4e-06 57.4 138 30.4
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 1.8e-06 57.0 138 32.6
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 1.8e-06 57.0 138 32.6
A05p45140 Brassica napus HOM05D003926 ORTHO05D005273 5.2e-06 55.5 139 32.4
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 5.2e-06 55.5 139 32.4
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 5.2e-06 55.5 139 32.4
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 5.2e-06 55.5 139 32.4
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 6.7e-06 55.1 138 31.9
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 6.7e-06 55.1 136 31.6
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 8.8e-06 54.7 138 29.7


User provided reference genes

Program Settings