Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 3607.4 1820 100.0
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 3402.8 1820 92.9
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 3388.6 1820 92.6
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 3354.7 1820 91.7
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 3177.5 1818 86.5
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3118.2 1828 84.8
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 3104.7 1821 84.3
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 3074.6 1820 84.2
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 3072.0 1821 83.6
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3027.3 1822 82.7
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 3009.6 1861 81.1
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2996.5 1821 82.0
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2662.1 1949 69.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2653.6 1858 71.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2606.6 1834 70.6
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2599.3 1939 68.3
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2592.4 1848 69.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2587.8 1841 70.3
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2582.7 1837 70.1
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2580.8 1837 69.3
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2578.5 1837 69.3
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2575.0 1806 71.3
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2572.7 1841 69.1
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2568.9 1837 69.7
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2561.2 1836 69.2
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2558.5 1836 69.1
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2551.2 1846 69.1
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2550.4 1844 68.5
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2536.5 1850 68.2
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2519.6 1862 67.7
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2513.0 1897 66.3
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2503.4 1835 68.2
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2498.0 1979 65.2
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2480.7 1837 67.3
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2478.7 1906 66.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2476.4 1837 67.4
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2463.0 1838 67.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2457.6 1837 67.1
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2457.2 1961 64.7
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2436.4 1713 70.1
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2405.2 1953 63.5
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2396.3 1837 66.6
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2362.0 1832 64.6
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2359.7 1832 65.4
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2356.3 1832 64.8
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2355.9 1840 64.4
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2355.9 1844 64.8
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2332.8 1837 64.4
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2327.0 1604 70.9
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 2323.9 1836 63.9
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2322.7 1833 62.7
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2317.0 1836 63.8
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2306.6 1740 65.5
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2287.3 1827 62.3
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2277.3 1835 63.4
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2266.1 1838 62.8
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2265.7 1836 62.0
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2244.9 1833 61.8
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2244.2 1837 62.3
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2243.8 1710 66.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2239.9 1954 58.8
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2232.6 1835 61.6
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2232.6 1836 61.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2231.1 1840 61.6
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2230.3 1832 62.0
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2229.1 1833 61.7
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2215.3 1735 65.5
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2196.4 1862 61.0
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2196.0 1845 61.0
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2188.7 1844 60.8
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2176.7 1837 60.8
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2170.6 1857 60.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2168.7 1845 60.4
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2167.1 1851 60.1
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2165.6 1835 60.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2145.9 1871 59.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2140.2 1867 59.8
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 2123.2 1466 72.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2087.8 1851 57.9
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2081.6 1835 58.2
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2081.6 1854 59.5
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 2038.8 1852 58.5
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2038.5 1788 61.0
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1969.5 1481 67.7
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1806.2 1531 60.7
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1750.7 1206 71.5
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1696.0 1217 68.1
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1657.1 1883 49.1
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1633.2 1341 62.8
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1567.0 1417 58.1
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1548.9 966 79.8
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1447.2 1950 43.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1428.7 1806 44.4
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1399.0 1950 42.2
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1359.0 1064 64.6
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1342.0 1348 55.3
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1219.9 933 64.5
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1162.9 899 63.4
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1162.5 1224 51.7
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1159.1 785 73.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1157.5 1165 54.3
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1154.0 1851 39.2
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1075.5 932 62.6
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 7.8e-280 968.4 923 56.2
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 7.3e-278 961.8 1667 38.5
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-253 880.9 829 56.0
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 9.6e-230 802.0 726 57.3
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 5.3e-228 796.2 648 62.3
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 6.3e-221 772.7 879 47.9
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.4e-220 771.5 516 72.7
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 6.9e-212 742.7 516 71.5
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 8.2e-205 719.2 511 68.9
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 2.5e-201 707.6 639 57.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.0e-186 659.1 873 47.8
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 6.8e-183 646.4 1078 38.2
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 1.2e-182 645.6 520 59.4
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.5e-177 626.7 565 60.7
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 4.9e-173 613.6 885 41.7
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 6.4e-157 560.1 745 44.0
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 6.0e-155 553.5 396 68.4
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 8.1e-152 543.1 295 91.2
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 2.6e-150 538.1 434 62.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.1e-148 532.7 435 67.8
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 6.6e-138 496.9 327 74.0
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 1.4e-132 479.2 453 56.1
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.9e-130 471.1 339 74.3
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 1.2e-123 449.5 370 60.8
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.7e-123 448.4 312 71.5
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.8e-122 445.7 549 44.6
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 3.2e-116 424.9 528 44.7
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 2.0e-110 405.6 839 34.4
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.0e-103 380.2 393 54.2
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.6e-102 378.6 408 55.4
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 1.7e-101 375.9 255 73.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.9e-101 375.2 311 60.8
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.2e-99 369.8 374 51.6
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 5.7e-97 360.9 339 56.3
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-83 316.6 186 82.8
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 2.1e-83 315.8 816 29.7
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.4e-65 255.4 183 74.9
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 1.6e-62 246.5 142 87.3
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 2.1e-59 236.1 164 67.1
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 1.4e-55 223.4 122 86.9
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 3.9e-45 188.7 231 45.0
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.4e-42 180.3 109 84.4
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 6.4e-40 171.4 126 64.3
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 6.0e-38 164.9 244 38.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.3e-37 163.7 100 83.0
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 5.1e-37 161.8 144 58.3
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 1.1e-36 160.6 104 81.7
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.1e-34 154.1 183 46.4
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 6.8e-34 151.4 101 73.3
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 9.9e-33 147.5 450 25.6
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 1.3e-32 147.1 223 38.1
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 6.4e-32 144.8 115 63.5
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.4e-31 143.7 154 50.0
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.0e-29 137.5 109 70.6
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 3.9e-29 135.6 124 58.1
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 1.5e-28 133.7 158 44.3
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 3.3e-28 132.5 314 31.2
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.1e-26 125.9 204 36.8
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.6e-25 122.9 103 64.1
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 7.6e-25 121.3 107 59.8
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 9.3e-23 114.4 177 38.4
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 2.7e-22 112.8 143 51.7
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 4.6e-22 112.1 188 38.3
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.7e-21 110.2 54 83.3
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 3.3e-20 105.9 124 43.5
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 7.3e-20 104.8 121 49.6
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 2.8e-19 102.8 124 43.5
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 1.4e-18 100.5 76 61.8
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 1.5e-17 97.1 75 65.3
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-17 97.1 86 50.0
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 9.9e-17 94.4 71 70.4
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 1.7e-16 93.6 104 47.1
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 1.3e-13 84.0 77 53.2
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 8.7e-13 81.3 58 72.4
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.8e-11 75.5 102 42.2
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 2.0e-09 70.1 75 42.7
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 8.4e-08 64.7 60 58.3
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 2.1e-06 60.1 70 48.6


User provided reference genes

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