Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 3.0e-119 431.8 209 100.0
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 1.4e-113 412.9 209 93.8
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.6e-110 402.1 209 91.4
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.6e-110 402.1 209 91.4
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 1.7e-109 399.4 209 90.4
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 4.1e-108 394.8 209 89.5
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 4.1e-108 394.8 209 89.5
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 5.0e-106 387.9 209 86.6
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 5.0e-106 387.9 209 86.6
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 2.5e-105 385.6 209 86.6
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 4.2e-105 384.8 209 87.1
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 4.7e-104 381.3 209 85.6
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 6.1e-104 380.9 209 85.6
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 2.0e-102 375.9 209 84.7
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 2.6e-102 375.6 209 85.2
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 85.6
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 84.7
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 5.7e-102 374.4 209 84.2
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 83.7
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 1.3e-101 373.2 190 93.7
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 83.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 83.7
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 82.8
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 83.3
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 83.7
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 84.2
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 81.3
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 83.3
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 83.3
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 1.1e-100 370.2 209 81.8
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 82.8
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.8e-100 369.4 209 83.7
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 2.4e-100 369.0 209 82.3
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 81.3
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 82.3
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 82.8
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 81.8
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 82.3
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 82.3
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 80.9
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 83.3
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 83.7
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 84.2
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 83.3
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 82.3
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 82.8
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 1.6e-99 366.3 209 81.8
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 2.0e-99 365.9 209 81.8
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 2.6e-99 365.5 209 81.8
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 2.6e-99 365.5 209 81.3
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.6e-99 365.5 209 82.8
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 82.8
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 82.3
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 7.7e-99 364.0 209 85.6
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 7.7e-99 364.0 209 83.7
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 1.0e-98 363.6 210 82.4
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 81.3
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 1.7e-98 362.8 209 81.8
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 3.8e-98 361.7 209 81.3
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 5.0e-98 361.3 208 79.8
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 1.1e-97 360.1 209 80.4
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 1.9e-97 359.4 209 81.3
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 81.3
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 2.5e-97 359.0 209 80.4
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 3.2e-97 358.6 209 83.3
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 4.2e-97 358.2 209 80.4
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 4.2e-97 358.2 209 79.4
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 4.2e-97 358.2 207 81.2
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 4.2e-97 358.2 209 81.3
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 5.5e-97 357.8 209 79.9
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 7.2e-97 357.5 209 79.9
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 9.4e-97 357.1 209 79.4
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 80.9
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 80.4
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.7e-96 355.5 221 78.7
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 2.7e-96 355.5 209 80.4
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 3.6e-96 355.1 209 80.9
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 3.6e-96 355.1 209 78.5
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 4.7e-96 354.8 209 79.9
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.4e-95 353.2 225 75.6
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.4e-95 353.2 208 79.8
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 8.8e-95 350.5 230 76.1
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 3.3e-94 348.6 209 78.5
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 4.4e-94 348.2 190 86.3
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 7.5e-94 347.4 230 75.2
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 1.7e-93 346.3 193 84.5
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.8e-93 344.7 240 72.5
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 2.4e-92 342.4 185 87.0
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 1.6e-91 339.7 243 68.3
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 1.1e-89 333.6 189 80.4
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 3.2e-89 332.0 209 74.6
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 3.2e-89 332.0 187 84.0
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 3.6e-88 328.6 187 82.4
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 4.7e-88 328.2 196 78.1
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 8.0e-88 327.4 209 72.2
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 8.0e-88 327.4 206 75.2
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 1.8e-87 326.2 208 70.2
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 2.3e-87 325.9 191 80.6
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 2.3e-87 325.9 288 59.4
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.0e-87 325.5 209 73.7
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 6.8e-87 324.3 187 82.4
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 2.4e-84 315.8 206 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 8.6e-82 307.4 205 69.3
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 7.0e-76 287.7 210 69.5
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 1.2e-75 287.0 187 75.9
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 5.0e-74 281.6 165 79.4
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 1.1e-73 280.4 165 79.4
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 1.7e-69 266.5 151 82.1
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 4.3e-65 251.9 203 59.6
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 2.1e-64 249.6 208 60.1
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 3.1e-63 245.7 179 66.5
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 2.0e-62 243.0 168 67.9
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 4.1e-60 235.3 209 58.4
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 3.5e-59 232.3 210 53.8
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 8.6e-58 227.6 135 78.5
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 2.3e-55 219.5 208 53.8
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 3.0e-50 202.6 152 67.8
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 2.2e-45 186.4 206 46.1
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 7.3e-41 171.4 207 40.1
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 1.1e-39 167.5 151 60.3
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.2e-35 154.1 171 44.4
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 2.5e-33 146.4 129 58.9
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 9.6e-33 144.4 84 79.8
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 1.8e-31 140.2 84 73.8
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 7.6e-30 134.8 135 48.1
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 3.8e-29 132.5 227 35.7
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.6e-24 117.1 74 75.7
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 4.3e-17 92.4 83 61.4
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 7.4e-17 91.7 43 95.3


User provided reference genes

Program Settings