Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.2e-275 950.3 512 100.0
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 5.9e-193 677.9 460 83.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.5e-143 513.1 533 58.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 6.2e-142 508.4 534 57.9
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.8e-141 506.9 563 54.7
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.2e-140 504.2 540 55.2
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-135 487.3 552 54.7
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 6.4e-123 445.3 556 49.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.1e-120 435.6 557 49.7
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.5e-119 434.1 544 48.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.9e-119 433.7 557 48.7
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 7.4e-119 431.8 569 48.9
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.6e-118 430.6 557 48.1
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.3e-104 383.6 523 47.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.6e-100 370.2 565 43.7
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 3.4e-100 369.8 557 44.2
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 7.7e-100 368.6 540 45.7
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.7e-99 367.5 547 44.2
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 2.9e-99 366.7 507 45.6
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.9e-99 366.7 514 44.9
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.9e-99 366.7 506 45.7
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.0e-99 365.9 514 44.4
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.4e-98 364.4 566 44.3
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 1.4e-98 364.4 552 42.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.5e-98 363.6 563 41.9
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.2e-98 362.8 556 41.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 7.2e-98 362.1 542 43.0
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 9.4e-98 361.7 547 42.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 9.4e-98 361.7 553 43.8
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.2e-97 361.3 554 42.4
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.6e-97 360.9 570 42.6
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.1e-97 360.5 500 45.2
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 2.1e-97 360.5 493 45.4
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.7e-97 360.1 563 41.7
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.6e-97 359.8 553 43.6
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 6.1e-97 359.0 563 41.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.0e-96 358.2 554 41.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.4e-96 357.8 554 42.4
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.4e-96 357.8 515 43.7
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.4e-96 357.8 542 42.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.4e-96 357.8 519 43.5
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.8e-96 357.5 581 39.9
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.8e-96 357.5 539 42.5
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.8e-96 357.5 539 42.9
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 3.0e-96 356.7 526 44.1
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 3.9e-96 356.3 542 42.1
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 3.9e-96 356.3 518 42.9
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 5.1e-96 355.9 585 40.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 6.7e-96 355.5 554 42.4
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 8.8e-96 355.1 540 42.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.5e-95 354.4 570 41.9
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 2.6e-95 353.6 565 42.8
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.4e-95 352.1 530 42.3
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.3e-94 351.3 496 42.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.3e-94 351.3 512 42.6
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-94 351.3 528 42.8
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-94 350.5 532 42.5
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 2.2e-94 350.5 531 41.4
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.8e-94 350.1 526 42.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.8e-94 350.1 531 42.4
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.3e-94 349.0 508 43.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.8e-93 347.4 489 43.8
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.1e-93 346.3 530 41.5
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 6.9e-93 345.5 516 42.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.4e-90 337.8 568 41.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.9e-90 337.4 516 41.1
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.9e-90 337.4 535 40.4
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.6e-89 334.3 597 39.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.6e-89 333.2 540 41.7
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 3.6e-89 333.2 550 40.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 5.7e-87 325.9 544 40.4
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.3e-86 324.7 573 39.4
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 8.2e-86 322.0 553 40.3
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.4e-85 321.2 534 39.3
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.6e-84 317.0 492 40.0
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.5e-84 316.2 543 39.2
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.0e-83 315.1 603 37.1
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 2.2e-83 313.9 544 39.5
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.9e-82 310.8 585 38.6
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 5.5e-82 309.3 552 37.9
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 7.2e-82 308.9 557 39.9
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.7e-81 307.0 405 45.7
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 4.7e-81 306.2 563 38.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.6e-79 300.4 546 38.6
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 3.3e-79 300.1 588 37.8
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 4.4e-79 299.7 569 38.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.3e-78 298.1 584 37.5
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.2e-78 297.4 386 47.7
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.2e-78 297.4 567 37.9
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 3.7e-78 296.6 571 37.0
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.8e-78 296.2 556 38.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.1e-77 295.0 544 37.9
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.4e-77 293.9 585 38.8
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.4e-77 293.9 561 37.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.1e-77 293.5 487 39.6
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 3.1e-77 293.5 554 37.7
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-76 291.6 362 46.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.0e-75 288.5 360 48.6
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.0e-75 288.5 310 50.6
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.3e-75 288.1 287 53.3
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.9e-75 287.0 585 41.0
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 4.2e-74 283.1 564 35.6
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-73 281.6 559 36.1
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 3.0e-72 276.9 448 39.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 8.8e-72 275.4 517 37.9
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.6e-71 273.9 567 37.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.4e-71 273.1 558 35.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 5.9e-68 262.7 580 37.2
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 7.7e-68 262.3 548 35.6
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 6.5e-67 259.2 275 50.5
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 3.7e-62 243.4 470 36.8
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.1e-61 241.9 701 30.2
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.1e-61 240.4 537 34.3
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.0e-61 239.2 643 31.6
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 7.3e-58 229.2 588 33.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.2e-57 228.4 379 39.6
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.8e-57 227.3 521 33.2
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 7.8e-52 209.1 601 30.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.7e-51 208.0 215 50.2
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 3.0e-51 207.2 272 44.9
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.9e-46 189.9 375 33.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.4e-45 187.6 522 29.1
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 3.3e-42 177.2 270 37.4
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-40 172.2 631 26.9
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 8.9e-40 169.1 285 37.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.3e-38 165.2 405 34.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 6.8e-32 142.9 177 46.9
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 9.9e-31 139.0 439 26.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 3.8e-30 137.1 290 32.8
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.3e-26 124.0 268 32.8
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.2e-25 122.1 169 50.3
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 6.2e-25 119.8 142 46.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.2e-22 111.3 137 46.7
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.8e-22 110.5 570 22.8
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.4e-21 107.8 260 28.1
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.8e-16 91.7 71 62.0
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 3.8e-14 84.0 162 32.7
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 4.6e-12 77.0 61 63.9
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.4e-10 69.7 84 47.6
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.4e-10 69.7 84 47.6
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 9.9e-07 59.3 77 39.0


User provided reference genes

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