Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 7.1e-111 404.1 221 100.0
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.1e-92 343.6 218 88.5
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 7.9e-86 320.9 220 84.1
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.1e-74 283.9 264 67.4
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.1e-74 283.9 264 67.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 7.2e-63 244.6 227 66.1
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 7.2e-63 244.6 218 67.9
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.2e-62 243.8 227 66.5
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 6.1e-62 241.5 220 68.2
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 4.8e-59 231.9 222 63.5
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 7.7e-57 224.6 219 60.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 2.2e-56 223.0 220 60.9
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 4.2e-55 218.8 220 60.5
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 1.6e-54 216.9 207 63.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 4.0e-53 212.2 216 59.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 5.2e-53 211.8 219 60.7
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 6.8e-53 211.5 224 58.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.8e-53 211.5 216 62.0
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.8e-53 211.1 222 59.5
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.2e-52 210.7 219 57.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.2e-52 210.7 219 59.8
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 2.0e-52 209.9 223 59.2
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 2.0e-52 209.9 211 60.2
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.0e-52 209.9 208 59.6
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-52 209.5 208 59.6
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.3e-51 207.2 219 58.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.3e-51 207.2 207 56.5
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.3e-51 207.2 221 57.9
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.8e-51 206.1 221 57.9
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.8e-51 206.1 212 60.8
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 6.3e-51 204.9 260 50.4
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.4e-50 203.8 229 56.8
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.8e-50 203.4 222 57.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.4e-50 203.0 221 55.2
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 3.1e-50 202.6 210 58.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.1e-50 202.6 217 58.1
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 5.4e-50 201.8 220 60.0
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 1.6e-49 200.3 212 60.8
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.0e-49 199.9 231 54.5
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.0e-49 199.9 221 55.7
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.7e-49 199.5 211 56.4
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 7.7e-49 198.0 208 55.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 7.7e-49 198.0 210 55.7
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 7.7e-49 198.0 216 57.9
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 7.7e-49 198.0 251 53.4
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.7e-48 196.8 216 57.4
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 2.2e-48 196.4 223 55.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.5e-48 194.9 215 57.2
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 6.5e-48 194.9 216 53.7
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.5e-48 194.5 215 55.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.9e-47 193.4 215 55.3
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 5.5e-47 191.8 222 56.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.2e-46 190.7 216 54.6
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 1.6e-46 190.3 203 57.1
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.6e-46 190.3 225 55.6
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 3.6e-46 189.1 208 55.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 8.0e-46 188.0 219 53.9
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.4e-45 187.2 212 55.2
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 4.0e-45 185.7 226 51.8
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 5.2e-45 185.3 221 52.9
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 6.8e-45 184.9 219 54.8
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 6.8e-45 184.9 241 49.4
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 8.8e-45 184.5 218 55.5
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.2e-44 184.1 216 53.7
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.5e-44 183.7 225 55.6
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.5e-44 183.7 212 53.3
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.5e-44 183.7 224 50.4
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.0e-44 183.3 221 53.4
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.6e-44 183.0 210 55.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 5.7e-44 181.8 246 48.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.3e-43 180.6 215 52.1
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.8e-42 176.8 215 52.6
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 1.8e-42 176.8 224 53.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 2.4e-42 176.4 234 50.0
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.4e-42 176.4 218 50.5
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.1e-42 176.0 224 54.0
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.4e-42 175.3 214 53.7
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.2e-41 174.1 223 52.9
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.0e-41 173.3 205 52.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-41 172.9 215 54.0
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 2.7e-41 172.9 215 52.6
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 4.5e-41 172.2 214 52.8
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 5.9e-41 171.8 218 52.3
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 5.9e-41 171.8 214 51.9
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.8e-40 169.1 209 49.8
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.5e-39 167.2 221 48.0
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.9e-39 166.8 210 52.9
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.5e-39 166.4 219 53.9
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.5e-39 166.4 222 48.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 3.3e-39 166.0 214 51.4
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 3.3e-39 166.0 210 52.9
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 5.6e-39 165.2 210 48.6
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 9.5e-39 164.5 313 39.9
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.1e-38 163.3 214 50.9
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.1e-38 163.3 214 50.9
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.1e-38 163.3 212 49.1
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.6e-38 162.5 213 49.3
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.0e-37 161.0 217 51.2
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 1.4e-37 160.6 178 55.6
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 1.8e-37 160.2 218 50.5
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.3e-37 159.8 215 49.3
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.3e-37 159.8 220 48.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.9e-37 157.9 216 50.5
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 8.9e-37 157.9 218 50.5
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 4.4e-36 155.6 207 50.7
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 5.7e-36 155.2 208 49.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 6.4e-35 151.8 220 48.2
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 6.4e-35 151.8 220 48.2
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.4e-35 151.8 164 55.5
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.4e-35 151.8 164 55.5
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 5.4e-34 148.7 215 47.9
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 2.7e-33 146.4 224 47.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-33 146.4 224 47.3
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 2.7e-33 146.4 224 47.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.3e-32 144.1 219 46.1
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.3e-32 144.1 177 53.7
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 3.0e-32 142.9 215 47.0
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 3.3e-31 139.4 227 43.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 9.5e-31 137.9 201 45.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 9.5e-31 137.9 201 45.8
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.1e-30 136.7 225 46.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.1e-29 132.9 155 56.1
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 7.5e-28 128.3 159 54.7
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 9.8e-28 127.9 303 38.0
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 4.1e-26 122.5 150 52.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.0e-24 116.3 218 41.3
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 5.0e-24 115.5 208 43.3
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 5.0e-24 115.5 207 41.5
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 6.6e-24 115.2 148 54.1
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.1e-21 107.8 105 58.1
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 6.8e-21 105.1 125 50.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 3.2e-18 96.3 176 45.5
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.6e-17 94.0 142 46.5
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.7e-16 90.5 250 33.2
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 8.6e-16 88.2 91 62.6
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.3e-13 80.1 198 34.8
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 2.3e-13 80.1 91 51.6
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.0e-12 77.0 79 54.4
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 8.4e-11 71.6 71 62.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 1.6e-09 67.4 91 48.4
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 2.7e-09 66.6 143 40.6
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.0e-08 64.7 60 61.7
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.0e-08 64.7 60 61.7
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.7e-08 63.9 44 75.0
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.9e-08 62.8 44 75.0
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.9e-07 60.5 112 42.0
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.2e-06 57.8 40 67.5
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.1e-06 55.1 73 47.9
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 8.1e-06 55.1 60 58.3


User provided reference genes

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