Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.1e-174 615.5 305 100.0
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 2.5e-90 336.3 252 71.0
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.0e-87 326.6 252 69.8
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 9.9e-87 324.3 252 67.5
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 6.4e-86 321.6 252 67.9
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 3.8e-78 295.8 245 64.5
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 9.3e-77 291.2 252 61.9
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 8.7e-75 284.6 245 62.9
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 8.7e-75 284.6 273 56.8
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.5e-74 283.9 245 61.6
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 4.3e-74 282.3 253 60.9
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.3e-74 281.6 256 59.4
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.3e-74 281.6 256 59.4
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.2e-70 270.0 252 56.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 4.9e-70 268.9 264 54.9
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.1e-69 267.7 236 58.5
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.9e-69 266.9 235 57.9
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.1e-68 263.5 234 59.0
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 2.1e-68 263.5 267 50.9
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 6.0e-68 261.9 238 57.6
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 6.0e-68 261.9 240 55.4
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 1.3e-67 260.8 251 56.2
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.3e-67 260.8 236 57.2
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 3.9e-67 259.2 256 52.3
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.1e-67 258.8 261 51.7
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 6.7e-67 258.5 259 52.5
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.7e-67 258.5 236 58.5
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 8.7e-67 258.1 241 56.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.1e-66 257.7 261 51.3
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.9e-66 256.9 251 55.0
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 7.4e-66 255.0 253 54.9
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.6e-65 253.8 231 58.4
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.6e-65 253.8 254 57.5
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.4e-64 250.8 273 50.5
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 5.3e-64 248.8 275 49.5
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.0e-63 246.9 258 53.5
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 8.4e-62 241.5 253 52.6
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.9e-61 240.4 257 51.4
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 2.1e-60 236.9 234 53.4
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 2.7e-60 236.5 236 53.4
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 7.9e-60 235.0 248 52.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 2.3e-59 233.4 237 53.6
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.3e-59 233.4 258 48.4
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 6.7e-59 231.9 296 44.3
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.1e-58 231.1 241 51.9
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.9e-58 230.3 255 52.9
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 4.3e-58 229.2 252 52.0
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.3e-57 227.6 258 48.1
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.1e-57 226.9 255 52.2
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.8e-57 226.5 274 48.2
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.4e-56 224.2 229 53.3
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 9.0e-56 221.5 261 47.9
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 9.0e-56 221.5 248 50.8
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.6e-55 219.9 258 48.1
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 7.6e-55 218.4 277 46.6
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 6.5e-54 215.3 264 44.3
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.5e-53 213.4 264 44.3
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.5e-53 212.2 261 46.4
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 3.5e-52 209.5 264 47.0
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 6.0e-52 208.8 281 43.4
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 7.9e-52 208.4 260 49.2
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 9.7e-50 201.4 250 46.0
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 6.3e-49 198.7 243 44.9
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.4e-48 197.6 252 45.6
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.4e-48 196.8 252 44.8
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 5.3e-48 195.7 274 40.9
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.5e-47 194.1 237 46.4
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 4.5e-47 192.6 289 40.5
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 9.3e-45 184.9 183 55.2
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 7.9e-44 181.8 274 40.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.0e-43 179.9 246 43.1
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-42 177.9 248 42.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.1e-42 177.9 277 39.7
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.9e-42 177.2 267 38.6
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 4.3e-42 176.0 139 69.8
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 7.4e-42 175.3 140 62.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.8e-41 173.3 278 39.2
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 2.8e-41 173.3 256 39.5
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 4.8e-41 172.6 282 37.6
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.8e-41 172.6 282 37.6
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.4e-40 171.0 282 37.2
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.4e-40 171.0 274 39.1
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 1.8e-40 170.6 163 54.0
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 3.1e-40 169.9 267 37.5
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 4.1e-40 169.5 282 36.5
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 5.3e-40 169.1 245 40.4
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 6.9e-40 168.7 253 39.1
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 9.1e-40 168.3 263 36.9
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.2e-39 167.9 284 37.0
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.2e-39 167.9 282 36.2
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-39 167.9 274 38.3
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 2.6e-39 166.8 269 36.8
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.6e-39 166.8 238 41.2
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 5.9e-39 165.6 242 38.4
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 2.2e-38 163.7 238 40.3
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.9e-37 160.6 269 37.2
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.2e-37 159.5 156 55.1
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 5.1e-35 152.5 212 42.9
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 3.1e-32 143.3 200 43.0
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 4.1e-32 142.9 245 36.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 2.6e-31 140.2 269 33.5
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.0e-30 138.3 257 33.1
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.1e-29 134.8 206 38.3
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 2.1e-28 130.6 224 36.2
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 6.7e-27 125.6 183 39.9
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.2e-25 118.6 88 63.6
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 7.0e-24 115.5 172 36.6
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.7e-17 94.4 72 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 6.3e-17 92.4 232 27.6
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.1e-16 90.1 120 44.2
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 5.3e-16 89.4 81 54.3
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 7.0e-16 89.0 70 54.3
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.0e-14 85.1 78 52.6
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 2.9e-14 83.6 194 27.8
Psat0s1585g0080 Pisum sativum HOM05D018984 ORTHO05D020974 6.5e-14 82.4 50 82.0
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.9e-13 80.9 200 25.5
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 3.2e-13 80.1 98 42.9
Psat6g061280 Pisum sativum HOM05D018984 ORTHO05D020974 1.2e-12 78.2 46 80.4
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 1.6e-12 77.8 54 64.8
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.6e-12 77.8 65 53.8
Psat5g176760 Pisum sativum HOM05D018984 ORTHO05D020974 3.6e-12 76.6 54 68.5
Psat5g057880 Pisum sativum HOM05D018984 ORTHO05D020974 8.0e-12 75.5 50 76.0
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 8.0e-12 75.5 121 38.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 8.8e-11 72.0 73 50.7
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 5.7e-10 69.3 43 72.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.1e-08 63.2 34 82.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 5.4e-08 62.8 158 29.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 9.1e-08 62.0 88 39.8
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.6e-07 61.2 32 84.4
Psat0s1952g0160 Pisum sativum HOM05D018984 ORTHO05D020974 2.7e-07 60.5 42 64.3
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.5e-07 60.1 153 29.4
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 7.7e-07 58.9 32 81.2
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 1.3e-06 58.2 47 66.0
Ciclev10010464m.g Citrus clementina HOM05D006740 ORTHO05D008571 1.7e-06 57.8 124 28.2
ATR0605G098 Amborella trichopoda HOM05D000424 ORTHO05D000355 6.5e-06 55.8 123 30.1
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 6.5e-06 55.8 136 27.9
Nn7g37559 Nelumbo nucifera HOM05D000424 ORTHO05D000355 6.5e-06 55.8 123 29.3


User provided reference genes

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