Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.2e-135 486.5 237 100.0
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 6.8e-43 178.3 104 82.7
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 3.4e-42 176.0 104 81.7
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 7.5e-42 174.9 104 80.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.3e-41 174.1 105 79.0
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.3e-41 174.1 104 80.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 1.3e-41 174.1 104 80.8
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 1.3e-41 174.1 104 80.8
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 1.7e-41 173.7 105 79.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 1.7e-41 173.7 104 78.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 2.2e-41 173.3 105 78.1
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 2.9e-41 172.9 104 79.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.9e-41 172.9 104 79.8
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 4.9e-41 172.2 104 78.8
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 6.4e-41 171.8 104 79.8
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 6.4e-41 171.8 104 79.8
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 6.4e-41 171.8 104 77.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 6.4e-41 171.8 104 77.9
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 8.3e-41 171.4 105 77.1
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 8.3e-41 171.4 104 79.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 8.3e-41 171.4 104 78.8
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 8.3e-41 171.4 104 77.9
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 1.1e-40 171.0 105 77.1
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-40 171.0 105 77.1
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 1.1e-40 171.0 105 77.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 1.1e-40 171.0 103 79.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 78.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.1e-40 171.0 104 77.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.4e-40 170.6 104 77.9
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.4e-40 170.6 104 76.9
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.4e-40 170.6 104 76.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.4e-40 170.6 104 76.9
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 1.9e-40 170.2 104 76.9
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.9e-40 170.2 104 77.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.9e-40 170.2 104 77.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 2.4e-40 169.9 104 76.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 3.2e-40 169.5 104 77.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 3.2e-40 169.5 105 77.1
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 3.2e-40 169.5 104 76.9
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 3.2e-40 169.5 104 76.9
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 3.2e-40 169.5 104 76.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 3.2e-40 169.5 104 76.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.9
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.9
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.0
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.9
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.9
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 76.9
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 77.9
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 77.9
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 77.9
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 4.1e-40 169.1 104 77.9
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.4e-40 168.7 102 79.4
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 7.0e-40 168.3 104 76.0
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.0e-40 168.3 102 79.4
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 7.0e-40 168.3 104 76.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 7.0e-40 168.3 104 76.9
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 7.0e-40 168.3 104 76.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 76.0
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 76.9
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 75.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 76.9
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 76.0
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 9.2e-40 167.9 105 75.2
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 9.2e-40 167.9 104 76.9
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.2e-39 167.5 104 76.9
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.2e-39 167.5 104 76.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 1.2e-39 167.5 104 76.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.6e-39 167.2 104 76.9
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.6e-39 167.2 106 75.5
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.6e-39 167.2 104 76.0
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 1.6e-39 167.2 104 76.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.6e-39 167.2 104 75.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 2.0e-39 166.8 104 76.9
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.0e-39 166.8 104 76.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.7e-39 166.4 104 76.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 2.7e-39 166.4 103 77.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 2.7e-39 166.4 103 76.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 3.5e-39 166.0 103 75.7
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 3.5e-39 166.0 104 76.9
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 3.5e-39 166.0 104 76.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 4.6e-39 165.6 104 76.9
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 4.6e-39 165.6 104 74.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.6e-39 165.6 104 75.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.6e-39 165.6 104 75.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 4.6e-39 165.6 104 75.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 6.0e-39 165.2 104 75.0
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 6.0e-39 165.2 104 76.0
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 7.8e-39 164.9 104 76.0
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 7.8e-39 164.9 104 75.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.0e-38 164.5 103 76.7
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 1.0e-38 164.5 104 76.9
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 1.3e-38 164.1 104 74.0
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.3e-38 164.1 103 74.8
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.7e-38 163.7 104 75.0
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 2.3e-38 163.3 104 75.0
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.9e-38 162.5 103 75.7
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 3.9e-38 162.5 110 70.9
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 5.0e-38 162.2 104 76.0
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 5.0e-38 162.2 104 74.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 6.6e-38 161.8 105 72.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.1e-37 161.0 103 73.8
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.5e-37 160.6 102 75.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 2.5e-37 159.8 104 72.1
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 3.3e-37 159.5 103 71.8
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 5.6e-37 158.7 104 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.6e-36 157.1 103 71.8
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.8e-36 156.4 104 74.0
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.6e-36 156.0 104 72.1
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 8.0e-36 154.8 103 72.8
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 8.0e-36 154.8 103 70.9
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 2.3e-35 153.3 99 73.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 8.9e-35 151.4 91 76.9
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 5.4e-32 142.1 101 68.3
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 7.1e-32 141.7 98 71.4
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 9.2e-32 141.4 92 73.9
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.0e-31 138.7 104 68.3
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.9e-29 133.7 90 73.3
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.1e-28 128.3 88 68.2
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.0e-27 125.9 119 58.0
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.9e-25 119.8 96 63.5
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.7e-25 119.4 77 74.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.1e-24 117.9 71 77.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.5e-23 112.8 71 76.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 8.6e-22 108.2 67 76.1
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 6.0e-15 85.5 50 78.0
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.9e-13 80.5 48 77.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 5.6e-13 79.0 77 46.8
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 9.6e-13 78.2 127 42.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.3e-12 77.8 104 45.2
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.2e-09 67.0 41 75.6


User provided reference genes

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