Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g067840 Pisum sativum HOM05D000657 ORTHO05D002092 1.9e-106 389.4 227 100.0
Psat1g067880 Pisum sativum HOM05D000657 ORTHO05D002092 1.9e-71 273.1 200 77.0
Psat6g130280 Pisum sativum HOM05D000657 ORTHO05D002092 2.9e-35 152.9 181 54.7
TPR.G40182 Trifolium pratense HOM05D000657 ORTHO05D002092 3.0e-32 142.9 181 51.4
Medtr1g050505 Medicago truncatula HOM05D000657 ORTHO05D002092 4.0e-32 142.5 181 50.8
Ca_26321_v3 Cicer arietinum L. HOM05D000657 ORTHO05D002092 4.8e-30 135.6 181 49.7
Lalb_Chr01g0010381 Lupinus albus HOM05D000657 ORTHO05D002092 1.5e-26 124.0 184 44.0
Glyma.10G112400 Glycine max HOM05D000657 ORTHO05D002092 7.2e-26 121.7 184 43.5
Glyma.02G160300 Glycine max HOM05D000657 ORTHO05D002092 9.4e-26 121.3 184 42.9
Lj5g0027753 Lotus japonicus HOM05D000657 ORTHO05D002092 1.2e-25 120.9 184 42.9
arahy.Tifrunner.gnm1.ann1.FGUL56 Arachis hypogaea HOM05D000657 ORTHO05D002092 3.6e-25 119.4 184 43.5
Prupe.1G277600 Prunus persica HOM05D000657 ORTHO05D002092 1.4e-24 117.5 184 41.8
arahy.Tifrunner.gnm1.ann1.G12UJP Arachis hypogaea HOM05D000657 ORTHO05D002092 4.0e-24 115.9 184 42.9
Ca_10296_v3 Cicer arietinum L. HOM05D000657 ORTHO05D002092 5.2e-24 115.5 178 41.6
Manes.08G062900 Manihot esculenta HOM05D000657 ORTHO05D002092 5.2e-24 115.5 184 41.3
Eucgr.A02198 Eucalyptus grandis HOM05D000657 ORTHO05D002092 1.5e-23 114.0 182 41.2
MD16G1069400 Malus domestica HOM05D000657 ORTHO05D002092 1.5e-23 114.0 184 41.3
RcHm_v2.0_Chr7g0204061 Rosa chinensis HOM05D000657 ORTHO05D002092 1.5e-23 114.0 184 40.2
MD13G1069100 Malus domestica HOM05D000657 ORTHO05D002092 2.0e-23 113.6 191 40.8
Gohir.A13G120900 Gossypium hirsutum HOM05D000657 ORTHO05D002092 2.6e-23 113.2 184 40.8
Lj5g0010537 Lotus japonicus HOM05D000657 ORTHO05D002092 4.4e-23 112.5 184 41.3
Phvul.007G247400 Phaseolus vulgaris HOM05D000657 ORTHO05D002092 4.4e-23 112.5 181 39.8
COL.COLO4_37649 Corchorus olitorius HOM05D000657 ORTHO05D002092 5.7e-23 112.1 184 40.8
Glyma.16G084100 Glycine max HOM05D000657 ORTHO05D002092 5.7e-23 112.1 178 43.3
Potri.016G032100 Populus trichocarpa HOM05D000657 ORTHO05D002092 5.7e-23 112.1 181 41.4
ClCG10G016430 Citrullus lanatus HOM05D000657 ORTHO05D002092 9.8e-23 111.3 179 41.3
Sabra06G0022600 Salix brachista HOM05D000657 ORTHO05D002092 9.8e-23 111.3 184 40.8
VMungo0720G2342 Vigna mungo HOM05D000657 ORTHO05D002092 1.3e-22 110.9 177 41.2
CARHR166750 Cardamine hirsuta HOM05D000657 ORTHO05D002092 1.7e-22 110.5 184 41.3
FvH4_5g19480 Fragaria vesca HOM05D000657 ORTHO05D002092 1.7e-22 110.5 184 39.7
FAN08G0239 Fragaria x ananassa HOM05D000657 ORTHO05D002092 1.7e-22 110.5 184 39.7
Sabra16G0035500 Salix brachista HOM05D000657 ORTHO05D002092 1.7e-22 110.5 181 40.9
Sp5g05910 Schrenkiella parvula HOM05D000657 ORTHO05D002092 1.7e-22 110.5 184 40.8
MELO3C009734.2 Cucumis melo HOM05D000657 ORTHO05D002092 2.2e-22 110.2 179 41.3
QL07p012961 Quercus lobata HOM05D000657 ORTHO05D002092 2.2e-22 110.2 184 39.1
CsaV3_3G039900 Cucumis sativus L. HOM05D000657 ORTHO05D002092 2.8e-22 109.8 182 39.6
PGR119G1817 Punica granatum HOM05D000657 ORTHO05D002092 2.8e-22 109.8 184 38.0
Thecc.08G185600 Theobroma cacao HOM05D000657 ORTHO05D002092 2.8e-22 109.8 184 40.8
CARHR159510 Cardamine hirsuta HOM05D000657 ORTHO05D002092 3.7e-22 109.4 184 40.8
FAN13G1101 Fragaria x ananassa HOM05D000657 ORTHO05D002092 3.7e-22 109.4 184 39.1
Gohir.D13G124900 Gossypium hirsutum HOM05D000657 ORTHO05D002092 3.7e-22 109.4 184 39.7
Gorai.013G139700 Gossypium raimondii HOM05D000657 ORTHO05D002092 3.7e-22 109.4 184 39.7
AT3G56640 Arabidopsis thaliana HOM05D000657 ORTHO05D002092 4.9e-22 109.0 184 40.2
FAN18G0618 Fragaria x ananassa HOM05D000657 ORTHO05D002092 4.9e-22 109.0 184 39.1
FAN18G3901 Fragaria x ananassa HOM05D000657 ORTHO05D002092 4.9e-22 109.0 184 39.1
AL5G38010 Arabidopsis lyrata HOM05D000657 ORTHO05D002092 6.3e-22 108.6 184 39.7
Carub.0005s2339 Capsella rubella HOM05D000657 ORTHO05D002092 6.3e-22 108.6 184 39.7
FAN04G1502 Fragaria x ananassa HOM05D000657 ORTHO05D002092 6.3e-22 108.6 184 39.1
Glyma.03G089100 Glycine max HOM05D000657 ORTHO05D002092 6.3e-22 108.6 178 41.6
Psat6g162560 Pisum sativum HOM05D000657 ORTHO05D002092 6.3e-22 108.6 176 40.9
TWI74G1072 Tripterygium wilfordii HOM05D000657 ORTHO05D002092 6.3e-22 108.6 184 39.7
Potri.006G034200 Populus trichocarpa HOM05D000657 ORTHO05D002092 8.3e-22 108.2 184 40.2
CANSAT11G1561 Cannabis sativa HOM05D000657 ORTHO05D002092 1.1e-21 107.8 184 38.0
Atru.chr1.1290 Acer truncatum HOM05D000657 ORTHO05D002092 1.4e-21 107.5 182 38.5
Cfa019969 Carpinus fangiana HOM05D000657 ORTHO05D002092 1.4e-21 107.5 178 39.9
Duzib116G0821 Durio zibethinus HOM05D000657 ORTHO05D002092 1.4e-21 107.5 184 40.8
Duzib177G1114 Durio zibethinus HOM05D000657 ORTHO05D002092 1.4e-21 107.5 184 39.1
Haze_20267 Corylus avellana HOM05D000657 ORTHO05D002092 1.8e-21 107.1 178 39.9
Sed0014096 Sechium edule HOM05D000657 ORTHO05D002092 1.8e-21 107.1 184 39.1
TPR.G19775 Trifolium pratense HOM05D000657 ORTHO05D002092 1.8e-21 107.1 176 39.2
VMungo0331G0879 Vigna mungo HOM05D000657 ORTHO05D002092 1.8e-21 107.1 178 42.1
Thhalv10005795m.g Eutrema salsugineum HOM05D000657 ORTHO05D002092 2.4e-21 106.7 184 39.7
TWI53G1144 Tripterygium wilfordii HOM05D000657 ORTHO05D002092 2.4e-21 106.7 184 39.1
CiPaw.10G043100 Carya illinoinensis HOM05D000657 ORTHO05D002092 3.1e-21 106.3 178 39.9
CsaV3_3G018420 Cucumis sativus L. HOM05D000657 ORTHO05D002092 3.1e-21 106.3 184 40.8
Migut.K00154 Erythranthe guttata HOM05D000657 ORTHO05D002092 4.1e-21 105.9 184 38.0
Sed0005354 Sechium edule HOM05D000657 ORTHO05D002092 4.1e-21 105.9 170 41.8
Ciclev10011104m.g Citrus clementina HOM05D000657 ORTHO05D002092 5.4e-21 105.5 184 37.5
Lalb_Chr02g0151471 Lupinus albus HOM05D000657 ORTHO05D002092 5.4e-21 105.5 181 39.2
Oeu057807.1 Olea europaea HOM05D000657 ORTHO05D002092 5.4e-21 105.5 184 38.0
Sp4g23250 Schrenkiella parvula HOM05D000657 ORTHO05D002092 5.4e-21 105.5 184 39.7
BcaC07g39972 Brassica carinata HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 39.7
BcaC07g40134 Brassica carinata HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 39.7
A09p49510 Brassica napus HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 39.7
BolC8t50808H Brassica oleracea HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 39.7
BraA09t40404Z Brassica rapa HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 39.7
Medtr1g087380 Medicago truncatula HOM05D000657 ORTHO05D002092 7.0e-21 105.1 156 44.2
GSVIVG01025793001 Vitis vinifera HOM05D000657 ORTHO05D002092 7.0e-21 105.1 184 38.6
Aa31LG3G1090 Aethionema arabicum HOM05D000657 ORTHO05D002092 1.2e-20 104.4 181 39.8
C08p31910 Brassica napus HOM05D000657 ORTHO05D002092 1.2e-20 104.4 184 39.1
MELO3C019522.2 Cucumis melo HOM05D000657 ORTHO05D002092 1.2e-20 104.4 179 40.2
unitig_899.g15091 Utricularia gibba HOM05D000657 ORTHO05D002092 2.7e-20 103.2 184 39.1
COL.COLO4_15490 Corchorus olitorius HOM05D000657 ORTHO05D002092 3.5e-20 102.8 177 40.1
Rhsim04G0115300 Rhododendron simsii HOM05D000657 ORTHO05D002092 3.5e-20 102.8 184 37.0
Cc06_g20210 Coffea canephora HOM05D000657 ORTHO05D002092 4.5e-20 102.4 182 38.5
MSTRG.26174 Avicennia marina HOM05D000657 ORTHO05D002092 5.9e-20 102.1 184 37.0
Dinv36120 Davidia involucrata HOM05D000657 ORTHO05D002092 5.9e-20 102.1 182 39.0
SalBow1G3501 Salvia bowleyana HOM05D000657 ORTHO05D002092 5.9e-20 102.1 176 39.8
THA.LOC104818579 Tarenaya hassleriana HOM05D000657 ORTHO05D002092 5.9e-20 102.1 184 38.6
CiPaw.09G050700 Carya illinoinensis HOM05D000657 ORTHO05D002092 7.7e-20 101.7 178 38.8
Oeu022989.1 Olea europaea HOM05D000657 ORTHO05D002092 7.7e-20 101.7 184 38.0
DCAR_009123 Daucus carota HOM05D000657 ORTHO05D002092 1.0e-19 101.3 184 36.4
SGA_v2.0_scaffold106G30541 Striga asiatica HOM05D000657 ORTHO05D002092 1.0e-19 101.3 186 36.6
CDE12G0552 Ceratophyllum demersum HOM05D000657 ORTHO05D002092 2.3e-19 100.1 115 47.8
Phvul.010G030700 Phaseolus vulgaris HOM05D000657 ORTHO05D002092 2.3e-19 100.1 176 41.5
Actinidia17699 Actinidia chinensis HOM05D000657 ORTHO05D002092 2.9e-19 99.8 184 37.0
arahy.Tifrunner.gnm1.ann1.M9PXLX Arachis hypogaea HOM05D000657 ORTHO05D002092 5.0e-19 99.0 179 38.0
CSS0025422 Camellia sinensis var. sinensis HOM05D000657 ORTHO05D002092 5.0e-19 99.0 184 37.5
CAN.G947.17 Capsicum annuum HOM05D000657 ORTHO05D002092 5.0e-19 99.0 184 37.0
Peaxi162Scf00076g00031 Petunia axillaris HOM05D000657 ORTHO05D002092 5.0e-19 99.0 184 37.0
Gohir.A05G250300 Gossypium hirsutum HOM05D000657 ORTHO05D002092 6.6e-19 98.6 173 39.3
Gohir.D05G253500 Gossypium hirsutum HOM05D000657 ORTHO05D002092 6.6e-19 98.6 173 39.3
Gorai.009G263500 Gossypium raimondii HOM05D000657 ORTHO05D002092 6.6e-19 98.6 173 39.3
Nn7g36951 Nelumbo nucifera HOM05D000657 ORTHO05D002092 8.6e-19 98.2 176 37.5
CSS0024203 Camellia sinensis var. sinensis HOM05D000657 ORTHO05D002092 1.1e-18 97.8 184 37.0
arahy.Tifrunner.gnm1.ann1.KU5GKQ Arachis hypogaea HOM05D000657 ORTHO05D002092 1.5e-18 97.4 179 37.4
MSTRG.10781 Avicennia marina HOM05D000657 ORTHO05D002092 1.5e-18 97.4 184 35.9
PSO339G3542 Papaver somniferum HOM05D000657 ORTHO05D002092 1.5e-18 97.4 176 38.1
Solyc12g096290.3 Solanum lycopersicum HOM05D000657 ORTHO05D002092 1.5e-18 97.4 184 37.0
Sopen12g032150 Solanum pennellii HOM05D000657 ORTHO05D002092 1.5e-18 97.4 184 37.0
PGSC0003DMG400029375 Solanum tuberosum HOM05D000657 ORTHO05D002092 1.5e-18 97.4 184 37.0
Dinv25932 Davidia involucrata HOM05D000657 ORTHO05D002092 1.9e-18 97.1 182 37.4
PSO384G1507 Papaver somniferum HOM05D000657 ORTHO05D002092 1.9e-18 97.1 176 38.1
SHI24552 Sapria himalayana HOM05D000657 ORTHO05D002092 1.9e-18 97.1 177 37.3
TAR623G0479 Trochodendron aralioides HOM05D000657 ORTHO05D002092 1.9e-18 97.1 184 37.0
Aqoxy3G00394 Aquilegia oxysepala HOM05D000657 ORTHO05D002092 4.3e-18 95.9 176 37.5
Nitab4.5_0001159g0080 Nicotiana tabacum HOM05D000657 ORTHO05D002092 5.6e-18 95.5 184 35.9
Nitab4.5_0001327g0050 Nicotiana tabacum HOM05D000657 ORTHO05D002092 5.6e-18 95.5 184 35.9
Hma1.2p1_0232F.1_g097955 Hydrangea macrophylla HOM05D000657 ORTHO05D002092 1.2e-17 94.4 184 35.3
Nn2g14737 Nelumbo nucifera HOM05D000657 ORTHO05D002092 1.2e-17 94.4 184 34.8
Psat5g140120 Pisum sativum HOM05D019138 ORTHO05D015734 1.2e-17 94.4 120 58.3
AUR62018387 Chenopodium quinoa HOM05D000657 ORTHO05D002092 3.6e-17 92.8 184 35.9
Hund24549 Selenicereus undatus HOM05D000657 ORTHO05D002092 6.1e-17 92.0 208 34.6
AUR62030275 Chenopodium quinoa HOM05D000657 ORTHO05D002092 8.0e-17 91.7 184 35.3
MBI19_g04346_MAGBIO Magnolia biondii HOM05D000657 ORTHO05D002092 1.4e-16 90.9 168 36.9
Ah.04g150690 Amaranthus hybridus HOM05D000657 ORTHO05D002092 1.8e-16 90.5 184 34.8
DCAR_013536 Daucus carota HOM05D000657 ORTHO05D002092 3.0e-16 89.7 184 33.7
EL10Ac3g07278 Beta vulgaris HOM05D000657 ORTHO05D002092 4.0e-16 89.4 168 36.3
Psat4g211480 Pisum sativum HOM05D001107 ORTHO05D001095 4.0e-16 89.4 76 78.9
Sc13g0000930 Simmondsia chinensis HOM05D000657 ORTHO05D002092 8.9e-16 88.2 184 33.2
PGR042G1216 Punica granatum HOM05D000657 ORTHO05D002092 1.2e-15 87.8 184 33.7
ECA248G3463 Erigeron canadensis HOM05D000657 ORTHO05D002092 2.6e-15 86.7 184 32.6
HanXRQChr13g0388011 Helianthus annuus HOM05D000657 ORTHO05D002092 3.4e-15 86.3 184 32.6
Lsat_1_v5_gn_5_157741 Lactuca sativa HOM05D000657 ORTHO05D002092 4.4e-15 85.9 184 32.1
Cpa.g.sc92.66 Carica papaya HOM05D000657 ORTHO05D002092 5.7e-15 85.5 65 66.2
ATR0743G130 Amborella trichopoda HOM05D000657 ORTHO05D002092 9.8e-15 84.7 184 33.2
Lj1E1056T0 Lonicera japonica HOM05D000657 ORTHO05D002092 9.8e-15 84.7 65 63.1
Peaxi162Scf00673g00447 Petunia axillaris HOM05D000657 ORTHO05D002092 9.8e-15 84.7 177 36.7
Psat2g115600 Pisum sativum HOM05D019138 ORTHO05D015734 2.2e-14 83.6 55 74.5
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 2.2e-14 83.6 70 81.4
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 6.4e-14 82.0 120 47.5
Os10g0415200 Oryza sativa ssp. japonica HOM05D000657 ORTHO05D002092 4.1e-13 79.3 67 61.2
MBI13_g00887_MAGBIO Magnolia biondii HOM05D000657 ORTHO05D002092 5.4e-13 79.0 174 32.8
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 7.0e-13 78.6 70 57.1
SEGI_04436 Sequoiadendron giganteum HOM05D000657 ORTHO05D002092 1.2e-12 77.8 122 42.6
HanXRQChr13g0422391 Helianthus annuus HOM05D000657 ORTHO05D002092 2.0e-12 77.0 167 31.7
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 2.0e-12 77.0 62 56.5
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 3.5e-12 76.3 57 64.9
Psat4g083240 Pisum sativum HOM05D000029 ORTHO05D015734 7.8e-12 75.1 62 61.3
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 1.0e-11 74.7 56 64.3
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 1.3e-11 74.3 65 53.8
Zm00001eb392990 Zea mays HOM05D000657 ORTHO05D002092 3.0e-11 73.2 67 56.7
Os03g0163500 Oryza sativa ssp. japonica HOM05D000657 ORTHO05D002092 3.9e-11 72.8 67 55.2
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 8.6e-11 71.6 159 35.2
RhsimUnG0219900 Rhododendron simsii HOM05D000657 ORTHO05D002092 8.6e-11 71.6 159 35.2
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 8.6e-11 71.6 63 57.1
Zm00001eb223060 Zea mays HOM05D000657 ORTHO05D002092 1.9e-10 70.5 65 56.9
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 3.3e-10 69.7 44 77.3
Psat7g238760 Pisum sativum HOM05D000855 ORTHO05D015734 1.2e-09 67.8 42 73.8
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 6.2e-09 65.5 54 57.4
Psat7g238720 Pisum sativum HOM05D000855 ORTHO05D015734 6.2e-09 65.5 42 71.4
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 8.0e-09 65.1 62 51.6
CDE02G4686 Ceratophyllum demersum HOM05D000657 ORTHO05D002092 1.0e-08 64.7 112 35.7
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.4e-08 64.3 66 50.0
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 1.8e-08 63.9 58 55.2
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 4.0e-08 62.8 58 53.4
Cc00_g01930 Coffea canephora HOM05D000029 ORTHO05D003879 4.0e-08 62.8 57 57.9
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 5.2e-08 62.4 59 57.6
Pp3c16_1100 Physcomitrium patens HOM05D000657 ORTHO05D002092 1.2e-07 61.2 182 27.5
Pp3c27_3270 Physcomitrium patens HOM05D000657 ORTHO05D002092 1.5e-07 60.8 182 27.5
AagrBONN_evm.TU.Sc2ySwM_368.1225 Anthoceros agrestis HOM05D000657 ORTHO05D002092 2.0e-07 60.5 182 25.8
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 3.4e-07 59.7 53 52.8
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 7.5e-07 58.5 56 55.4
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 7.5e-07 58.5 56 53.6
Medtr1395s0010 Medicago truncatula HOM05D000029 ORTHO05D003879 9.8e-07 58.2 36 72.2
Medtr1g096260 Medicago truncatula HOM05D000029 ORTHO05D003879 9.8e-07 58.2 36 72.2
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 9.8e-07 58.2 36 72.2
Ah.05g178020 Amaranthus hybridus HOM05D000029 ORTHO05D003879 2.2e-06 57.0 58 50.0
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 3.7e-06 56.2 53 50.9
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 4.9e-06 55.8 53 50.9
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.9e-06 55.8 59 52.5


User provided reference genes

Program Settings