Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 3641.7 1892 100.0
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 3401.3 1892 93.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 3401.3 1892 92.9
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 3343.1 1892 91.0
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 3204.1 1891 86.4
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 3201.8 1892 86.8
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 3124.7 1894 85.0
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 3078.9 1903 84.1
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2906.7 2325 68.3
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2795.4 1891 75.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2778.8 1893 74.6
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2776.5 1893 74.7
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2776.1 1891 74.4
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2751.9 1894 74.2
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2744.9 1894 73.8
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2714.5 1893 72.6
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2708.7 1894 73.3
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2702.2 1892 73.0
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2698.7 1890 72.9
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2695.2 1893 72.9
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2694.8 1891 72.3
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2692.9 1891 72.2
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2690.2 1924 72.4
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2671.7 1890 71.9
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2669.8 1919 71.4
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2662.1 1910 72.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2646.7 1906 71.4
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2644.4 1893 71.6
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2639.4 1891 71.3
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2624.7 1897 70.4
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2618.6 1955 69.5
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2616.3 1897 70.8
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2602.4 2024 67.7
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2599.3 1890 70.2
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2565.0 1900 70.3
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2560.8 1893 69.5
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2554.6 1893 69.3
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2550.8 1899 69.0
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2547.7 1892 68.1
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2541.1 1717 75.4
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 2536.1 1892 68.4
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2530.7 1895 68.5
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2524.6 1895 67.8
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2524.6 1892 67.7
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2518.0 1893 67.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2491.1 1892 67.7
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2489.9 1894 66.8
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2486.1 1898 67.2
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2472.2 1891 67.3
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2461.4 1893 67.2
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2459.1 1901 67.0
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2454.1 1962 65.7
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2451.0 1906 66.7
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2450.2 1896 67.1
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2442.2 1897 65.8
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 2439.8 1895 66.2
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 2436.8 1896 66.0
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 2435.2 1895 65.9
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2433.3 1910 66.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 2428.7 1892 66.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 2420.2 1896 66.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2408.6 1954 64.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2400.5 1636 74.1
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 2375.1 1934 64.2
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 2368.6 1893 64.8
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2368.6 1894 65.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2362.0 1900 64.7
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2361.6 2024 61.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 2361.3 1900 64.5
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 2356.6 1901 64.5
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2330.4 1892 64.1
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2325.4 1893 64.4
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2305.8 1590 73.6
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2278.4 1893 63.0
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2274.6 1935 62.6
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 2274.2 1896 62.4
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 2177.5 1461 78.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2150.9 1477 74.2
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2130.1 1512 72.9
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1912.5 1585 62.1
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1843.6 1431 66.3
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1741.5 1920 49.3
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1738.0 1191 73.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1685.2 1911 48.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1666.4 1432 61.9
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1622.4 1916 47.1
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1602.0 1453 57.1
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1552.0 1934 45.1
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1540.0 1891 49.2
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1528.5 960 82.6
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1452.2 1200 62.2
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1425.2 840 85.2
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1333.5 1247 55.8
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1297.0 1952 40.2
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1197.6 1128 57.7
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1086.6 1650 42.7
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.4e-310 1068.9 1255 48.4
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.2e-293 1013.4 780 65.9
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-285 987.3 1650 39.8
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 5.3e-271 939.1 783 60.4
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.9e-258 896.3 771 59.0
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.3e-240 838.2 692 63.9
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 4.1e-239 833.2 702 63.7
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.8e-218 764.6 1028 45.1
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.8e-207 728.0 609 63.9
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.4e-202 711.8 1039 40.4
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 4.0e-202 710.3 1048 41.0
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 7.7e-198 696.0 522 69.3
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.0e-194 684.1 702 51.7
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.0e-181 641.0 514 65.8
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.4e-159 568.2 495 62.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 5.4e-151 540.4 424 69.3
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 5.0e-128 464.2 340 74.4
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.9e-127 462.2 400 58.2
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 6.7e-125 453.8 414 63.8
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.3e-124 451.1 266 88.7
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 2.3e-117 428.7 299 71.9
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.6e-94 352.8 353 58.6
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 2.7e-94 352.1 228 79.4
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 6.8e-93 347.4 329 55.9
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 6.5e-88 330.9 328 54.9
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 8.5e-88 330.5 214 77.6
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.7e-86 325.5 278 60.8
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.4e-82 313.2 334 55.7
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 5.4e-82 311.2 355 49.0
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 2.3e-77 295.8 307 53.1
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 4.9e-67 261.5 176 76.7
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.5e-60 240.0 182 65.9
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-57 229.6 331 45.6
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 6.0e-57 228.0 211 62.6
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 8.1e-54 217.6 227 53.3
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 8.1e-54 217.6 227 53.3
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.8e-53 216.5 386 39.6
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.5e-52 213.4 297 43.8
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.4e-50 206.1 179 60.3
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.3e-48 200.3 126 89.7
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.3e-48 199.5 216 52.3
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 6.6e-48 198.0 1752 21.9
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 1.1e-47 197.2 151 79.5
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 3.1e-45 189.1 159 64.8
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 8.9e-45 187.6 400 36.8
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 1.9e-39 169.9 300 43.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 4.3e-39 168.7 162 59.3
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 7.6e-36 157.9 769 24.3
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 4.6e-33 148.7 326 31.9
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 6.0e-33 148.3 987 24.1
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.7e-32 146.7 124 54.0
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.8e-30 139.4 75 84.0
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 9.0e-29 134.4 117 59.8
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 7.6e-28 131.3 171 48.5
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 9.9e-28 131.0 75 85.3
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-25 123.6 97 64.9
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.1e-23 117.5 254 35.0
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 2.8e-22 112.8 151 46.4
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 4.8e-22 112.1 78 66.7
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 6.2e-22 111.7 101 60.4
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 3.1e-21 109.4 81 70.4
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.9e-19 102.8 55 87.3
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.9e-19 102.1 114 43.9
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 3.5e-17 95.9 56 85.7
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 6.7e-16 91.7 102 49.0
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 1.9e-15 90.1 102 48.0
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 8.2e-14 84.7 80 52.5
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.3e-11 77.4 61 70.5
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 1.4e-10 73.9 37 89.2
Psat6g208560 Pisum sativum HOM05D003776 ORTHO05D004459 5.5e-10 72.0 59 84.7
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 9.3e-10 71.2 66 57.6
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.2e-09 70.9 44 72.7
Medtr6g086755 Medicago truncatula HOM05D003776 ORTHO05D004459 1.2e-09 70.9 59 71.2
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 4.6e-09 68.9 138 39.9
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.8e-08 67.0 64 48.4
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 1.8e-08 67.0 74 56.8
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.0e-08 66.2 43 67.4
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 6.7e-08 65.1 34 85.3
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 1.1e-07 64.3 41 75.6
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 2.5e-07 63.2 91 47.3
FvH4_1g02070 Fragaria vesca HOM05D000524 ORTHO05D035235 3.3e-07 62.8 47 61.7
Psat7g264120 Pisum sativum HOM05D003776 ORTHO05D023078 9.7e-07 61.2 31 100.0
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.2e-06 60.1 44 63.6
Psat6g208520 Pisum sativum HOM05D003776 ORTHO05D004459 3.7e-06 59.3 63 73.0
SEGI_26904 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 8.2e-06 58.2 54 50.0


User provided reference genes

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