Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s6682g0080 Pisum sativum HOM05D001129 ORTHO05D321826 2.5e-74 282.3 135 100.0
Psat0s4995g0040 Pisum sativum HOM05D001129 ORTHO05D003814 4.5e-44 181.8 100 88.0
Psat0s6682g0040 Pisum sativum HOM05D001129 ORTHO05D015438 4.9e-38 161.8 88 86.4
Psat0s475g0040 Pisum sativum HOM05D001129 ORTHO05D321095 6.4e-38 161.4 79 94.9
Psat0s475g0120 Pisum sativum HOM05D001129 ORTHO05D320139 5.9e-36 154.8 82 90.2
Psat0s427g0040 Pisum sativum HOM05D001129 ORTHO05D003814 1.6e-33 146.7 76 90.8
Psat5g028240 Pisum sativum HOM05D001129 ORTHO05D326985 1.2e-20 104.0 58 86.2
Medtr5g095180 Medicago truncatula HOM05D001129 ORTHO05D003814 4.7e-17 92.0 100 45.0
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 8.4e-14 81.3 115 46.1
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.9e-13 80.1 112 42.0
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 1.9e-13 80.1 112 42.0
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 7.1e-13 78.2 115 45.2
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 7.1e-13 78.2 112 42.9
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.6e-12 77.0 114 41.2
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.6e-12 77.0 91 46.2
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 2.1e-12 76.6 115 44.3
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.7e-12 76.3 91 42.9
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.7e-12 76.3 91 42.9
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 7.8e-12 74.7 91 46.2
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 7.8e-12 74.7 115 44.3
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 1.0e-11 74.3 91 44.0
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 1.0e-11 74.3 91 44.0
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.3e-11 73.9 91 45.1
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.3e-11 73.9 92 43.5
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.7e-11 73.6 91 45.1
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 2.3e-11 73.2 92 43.5
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.3e-11 73.2 91 44.0
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 45.1
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 45.1
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 45.1
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 45.1
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 45.1
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 3.9e-11 72.4 91 42.9
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 5.1e-11 72.0 110 41.8
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 5.1e-11 72.0 91 42.9
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-11 72.0 91 42.9
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-11 72.0 91 42.9
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 5.1e-11 72.0 114 38.6
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 5.1e-11 72.0 91 45.1
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 6.6e-11 71.6 91 44.0
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 6.6e-11 71.6 92 45.7
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 6.6e-11 71.6 91 44.0
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 6.6e-11 71.6 99 40.4
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 8.6e-11 71.2 91 45.1
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 8.6e-11 71.2 91 44.0
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 8.6e-11 71.2 91 42.9
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 8.6e-11 71.2 129 35.7
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.1e-10 70.9 92 46.7
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 1.5e-10 70.5 91 44.0
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.5e-10 70.5 91 42.9
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.5e-10 70.5 92 43.5
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.9e-10 70.1 91 44.0
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 1.9e-10 70.1 100 43.0
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.5e-10 69.7 91 42.9
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 2.5e-10 69.7 112 41.1
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 2.5e-10 69.7 92 44.6
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 2.5e-10 69.7 91 44.0
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 2.5e-10 69.7 91 41.8
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.5e-10 69.7 91 40.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 3.3e-10 69.3 91 42.9
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 3.3e-10 69.3 91 42.9
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 3.3e-10 69.3 91 42.9
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 3.3e-10 69.3 91 44.0
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 3.3e-10 69.3 113 38.9
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 4.3e-10 68.9 91 41.8
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 4.3e-10 68.9 91 42.9
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 4.3e-10 68.9 91 40.7
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 4.3e-10 68.9 91 41.8
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 4.3e-10 68.9 104 40.4
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 4.3e-10 68.9 91 42.9
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 5.6e-10 68.6 132 34.8
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 5.6e-10 68.6 111 36.9
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 5.6e-10 68.6 92 43.5
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 5.6e-10 68.6 91 41.8
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 7.3e-10 68.2 91 42.9
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 9.6e-10 67.8 91 42.9
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 9.6e-10 67.8 91 39.6
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.2e-09 67.4 91 41.8
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.2e-09 67.4 91 41.8
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.2e-09 67.4 91 41.8
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.2e-09 67.4 98 40.8
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.2e-09 67.4 92 44.6
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.2e-09 67.4 92 44.6
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 1.2e-09 67.4 92 44.6
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 1.2e-09 67.4 91 41.8
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.6e-09 67.0 117 35.9
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.6e-09 67.0 104 38.5
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 2.1e-09 66.6 91 41.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.1e-09 66.6 91 41.8
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 2.1e-09 66.6 91 41.8
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.1e-09 66.6 91 40.7
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 2.1e-09 66.6 92 43.5
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 2.1e-09 66.6 100 41.0
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 2.8e-09 66.2 84 42.9
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 2.8e-09 66.2 91 40.7
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 2.8e-09 66.2 91 40.7
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 2.8e-09 66.2 107 34.6
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.8e-09 66.2 107 36.4
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 3.6e-09 65.9 99 38.4
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 3.6e-09 65.9 91 39.6
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 4.7e-09 65.5 91 38.5
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 4.7e-09 65.5 91 40.7
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 4.7e-09 65.5 91 40.7
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 4.7e-09 65.5 91 41.8
Psat0s475g0080 Pisum sativum HOM05D001129 ORTHO05D328588 4.7e-09 65.5 109 42.2
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 6.2e-09 65.1 91 39.6
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 6.2e-09 65.1 103 35.0
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 6.2e-09 65.1 91 41.8
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 8.1e-09 64.7 91 41.8
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 8.1e-09 64.7 91 39.6
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 1.1e-08 64.3 90 38.9
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 1.1e-08 64.3 91 42.9
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.1e-08 64.3 92 42.4
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 1.1e-08 64.3 92 42.4
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.4e-08 63.9 91 37.4
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-08 63.9 91 40.7
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 1.4e-08 63.9 90 40.0
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.8e-08 63.5 91 39.6
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 1.8e-08 63.5 51 58.8
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 2.4e-08 63.2 92 44.6
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 2.4e-08 63.2 109 40.4
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 4.0e-08 62.4 91 39.6
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 4.0e-08 62.4 91 38.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.9e-08 61.2 91 39.6
A04p03100 Brassica napus HOM05D001129 ORTHO05D003157 1.5e-07 60.5 99 34.3
PGR004G2267 Punica granatum HOM05D001129 ORTHO05D003157 2.0e-07 60.1 99 35.4
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 2.6e-07 59.7 91 40.7
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.6e-07 59.7 91 40.7
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.6e-07 59.7 91 40.7
BraA04t16033Z Brassica rapa HOM05D001129 ORTHO05D003157 4.4e-07 58.9 99 34.3
PRCOL_00003896 Prasinoderma coloniale HOM05D001129 ORTHO05D003814 4.4e-07 58.9 91 37.4
BcaC02g09940 Brassica carinata HOM05D001129 ORTHO05D003157 7.6e-07 58.2 99 34.3
C04p34960 Brassica napus HOM05D001129 ORTHO05D003157 7.6e-07 58.2 99 34.3
BolC4t25051H Brassica oleracea HOM05D001129 ORTHO05D003157 7.6e-07 58.2 99 34.3
PGR004G1973 Punica granatum HOM05D001129 ORTHO05D003157 2.9e-06 56.2 99 32.3
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 3.8e-06 55.8 92 38.0
CBR_g12082 Chara braunii HOM05D001129 ORTHO05D003157 4.9e-06 55.5 91 34.1
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 6.4e-06 55.1 86 41.9
Gorai.001G201100 Gossypium raimondii HOM05D001129 ORTHO05D003814 6.4e-06 55.1 74 44.6
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 6.4e-06 55.1 103 35.0
THA.LOC104802114 Tarenaya hassleriana HOM05D001129 ORTHO05D003157 6.4e-06 55.1 99 30.3
Ciclev10004240m.g Citrus clementina HOM05D001129 ORTHO05D003157 8.4e-06 54.7 99 32.3
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 8.4e-06 54.7 92 39.1


User provided reference genes

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