Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 0.0e+00 1147.1 623 100.0
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.2e-301 1039.3 656 82.9
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 4.2e-278 961.1 668 76.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 2.1e-256 889.0 658 71.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 2.3e-255 885.6 656 70.9
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.2e-245 853.2 656 69.1
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.8e-219 764.6 658 61.4
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.9e-214 749.6 657 60.4
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 5.3e-204 714.9 655 58.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.5e-198 696.8 658 57.8
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 4.7e-192 675.2 491 71.9
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 2.2e-189 666.4 661 53.9
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.7e-184 649.4 662 53.0
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.5e-182 643.7 660 54.2
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.0e-130 471.5 639 44.3
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.4e-119 434.5 666 41.1
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 4.5e-118 429.5 652 40.3
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 8.7e-114 415.2 670 41.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.7e-114 415.2 652 39.7
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 5.6e-113 412.5 654 39.8
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.6e-113 411.8 654 39.8
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.2e-112 409.1 672 40.2
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.5e-110 404.4 666 40.7
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 1.8e-106 391.0 638 39.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 9.0e-103 378.6 673 38.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 5.8e-102 375.9 669 38.4
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 8.4e-101 372.1 646 37.5
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 4.2e-100 369.8 672 38.1
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.2e-100 369.8 639 37.2
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.6e-99 366.3 664 36.7
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.9e-99 365.5 663 36.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 1.3e-98 364.8 671 37.0
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 3.3e-97 360.1 654 37.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.3e-97 360.1 648 38.0
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.3e-96 355.9 666 36.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.1e-95 355.1 634 37.4
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.8e-95 354.4 676 34.8
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 9.0e-95 352.1 653 37.8
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.7e-91 340.5 678 34.4
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.3e-90 338.2 504 40.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.8e-90 337.8 659 36.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 9.7e-89 332.0 656 34.0
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.4e-87 328.2 657 34.7
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 5.9e-86 322.8 606 37.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.0e-85 322.0 642 34.7
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.2e-83 315.1 695 33.2
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 5.1e-82 309.7 764 31.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.7e-81 305.4 771 32.4
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.0e-78 297.7 663 33.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.4e-78 297.0 663 33.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.7e-78 295.8 657 33.0
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 6.5e-77 292.7 795 29.9
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 1.4e-76 291.6 816 29.8
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 4.2e-76 290.0 642 33.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.5e-76 289.7 661 32.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 5.5e-76 289.7 641 32.6
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.2e-76 289.3 652 33.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.7e-75 287.3 649 33.9
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.7e-75 287.3 654 31.8
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.0e-74 285.4 653 34.3
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.0e-74 285.4 652 33.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.8e-74 284.6 743 30.4
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.3e-74 284.3 472 39.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.3e-74 284.3 508 38.8
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 6.7e-74 282.7 651 32.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.8e-74 282.3 661 32.7
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-73 282.0 652 32.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.5e-73 281.6 852 28.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.3e-73 280.4 611 33.1
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.3e-72 278.5 673 31.9
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 6.3e-72 276.2 652 32.1
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.8e-71 274.6 672 32.3
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 5.9e-70 269.6 654 32.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.7e-70 269.2 666 32.1
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.7e-70 269.2 516 33.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 2.5e-68 264.2 657 31.8
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.6e-67 261.5 508 34.8
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 5.2e-66 256.5 686 30.8
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.6e-65 254.2 521 34.4
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-65 253.8 521 35.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.3e-64 251.9 620 32.4
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.2e-64 251.1 703 29.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.8e-64 250.8 660 31.4
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 8.2e-64 249.2 446 38.6
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-63 248.4 802 28.8
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 7.0e-63 246.1 702 30.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 1.6e-62 245.0 672 28.3
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.8e-61 240.4 628 30.1
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 4.2e-60 236.9 701 28.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 7.2e-60 236.1 663 27.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-59 235.3 645 32.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.6e-59 235.0 597 30.3
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.1e-59 233.0 753 29.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 7.5e-57 226.1 418 34.2
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 7.5e-57 226.1 611 29.8
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 7.5e-57 226.1 540 31.9
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.2e-56 224.6 625 31.7
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 6.3e-56 223.0 616 32.0
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 4.5e-54 216.9 497 33.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 8.6e-53 212.6 474 32.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 4.4e-49 200.3 467 31.7
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.4e-42 178.7 445 31.7
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.3e-40 172.2 543 29.7
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 2.8e-35 154.5 487 28.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.6e-35 154.1 468 25.9
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.2e-35 153.3 297 34.7
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.1e-34 151.0 468 26.9
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 4.0e-34 150.6 248 38.3
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.8e-34 149.8 355 31.3
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.9e-34 149.4 601 25.5
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.5e-33 148.7 490 26.1
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.4e-31 142.1 274 35.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.9e-31 141.7 298 32.9
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.4e-31 140.2 449 29.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 7.8e-30 136.3 244 33.6
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.0e-29 136.0 250 34.4
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.0e-29 136.0 250 34.4
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.0e-29 136.0 455 29.9
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.7e-29 135.2 193 38.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 8.6e-29 132.9 397 28.5
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.5e-28 132.1 193 38.3
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.5e-28 131.3 260 34.2
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 5.6e-28 130.2 241 34.4
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 9.5e-28 129.4 192 38.0
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-27 129.0 405 27.7
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.6e-27 128.6 240 33.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.6e-27 128.6 240 33.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-27 127.9 241 33.6
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.6e-27 127.5 244 33.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 3.6e-27 127.5 274 31.4
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-26 125.9 247 33.2
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.4e-26 125.6 241 33.6
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.8e-26 125.2 245 31.4
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.7e-24 118.6 281 31.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.7e-24 118.6 482 27.4
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.9e-24 117.9 244 32.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.9e-23 115.2 137 40.1
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 7.1e-23 113.2 184 36.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 6.0e-22 110.2 398 26.1
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.1e-21 107.1 376 25.8
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 4.7e-19 100.5 104 51.9
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 8.1e-19 99.8 153 36.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 4.0e-18 97.4 160 33.8
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 4.1e-15 87.4 374 22.5
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 2.1e-14 85.1 461 22.3
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.0e-13 81.3 102 44.1
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.9e-12 78.6 136 34.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.4e-09 67.8 69 44.9
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.4e-09 67.4 100 33.0
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.9e-08 64.7 44 63.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.4e-07 61.6 99 34.3


User provided reference genes

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