Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s493g0040 Pisum sativum HOM05D002656 ORTHO05D003062 8.5e-63 243.4 117 100.0
Psat4g061440 Pisum sativum HOM05D002656 ORTHO05D003062 8.5e-63 243.4 117 100.0
Psat4g061400 Pisum sativum HOM05D002656 ORTHO05D003062 4.7e-61 237.7 117 97.4
Psat7g021360 Pisum sativum HOM05D002656 ORTHO05D003062 1.3e-47 193.0 100 90.0
Psat0s301g0200 Pisum sativum HOM05D002656 ORTHO05D003446 4.2e-46 188.0 91 96.7
Psat6g145440 Pisum sativum HOM05D002656 ORTHO05D000895 5.2e-44 181.0 91 92.3
Psat7g021240 Pisum sativum HOM05D002656 ORTHO05D000895 1.0e-36 156.8 83 86.7
Psat0s636g0080 Pisum sativum HOM05D002656 ORTHO05D003062 2.3e-36 155.6 97 78.4
Psat0s2266g0080 Pisum sativum HOM05D002656 ORTHO05D003062 7.8e-32 140.6 97 68.0
Ca_20576_v3 Cicer arietinum L. HOM05D002656 ORTHO05D003062 1.7e-31 139.4 97 66.0
Medtr4g065150 Medicago truncatula HOM05D002656 ORTHO05D003062 5.6e-30 134.4 97 66.0
TPR.G13668 Trifolium pratense HOM05D002656 ORTHO05D003062 1.0e-28 130.2 97 64.9
Medtr4g065200 Medicago truncatula HOM05D002656 ORTHO05D003062 1.5e-27 126.3 97 61.9
Lj3g0026413 Lotus japonicus HOM05D002656 ORTHO05D003062 3.4e-27 125.2 97 61.9
Lalb_Chr19g0138181 Lupinus albus HOM05D002656 ORTHO05D003062 3.4e-27 125.2 97 58.8
Lalb_Chr01g0003311 Lupinus albus HOM05D002656 ORTHO05D003062 7.5e-27 124.0 96 58.3
Phvul.011G057700 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.4e-25 119.8 95 60.0
VMungo1127G1189 Vigna mungo HOM05D002656 ORTHO05D003062 1.9e-25 119.4 96 58.3
VMungo1127G0976 Vigna mungo HOM05D002656 ORTHO05D003062 3.2e-25 118.6 97 59.8
Glyma.11G131600 Glycine max HOM05D002656 ORTHO05D003062 7.0e-25 117.5 97 58.8
Phvul.011G057800 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.6e-24 116.3 97 56.7
Glyma.11G131700 Glycine max HOM05D002656 ORTHO05D003062 2.7e-24 115.5 97 56.7
Glyma.12G055900 Glycine max HOM05D002656 ORTHO05D003062 3.5e-24 115.2 97 57.7
TPR.G13663 Trifolium pratense HOM05D002656 ORTHO05D003062 6.0e-24 114.4 112 52.7
arahy.Tifrunner.gnm1.ann1.3A78DL Arachis hypogaea HOM05D002656 ORTHO05D003062 7.8e-24 114.0 100 57.0
arahy.Tifrunner.gnm1.ann1.S1942W Arachis hypogaea HOM05D002656 ORTHO05D003062 7.8e-24 114.0 100 57.0
Lalb_Chr03g0026271 Lupinus albus HOM05D002656 ORTHO05D003062 1.3e-23 113.2 98 55.1
Lj2A649T45 Lonicera japonica HOM05D002656 ORTHO05D003062 3.0e-23 112.1 109 52.3
Ciclev10014240m.g Citrus clementina HOM05D002656 ORTHO05D003062 2.5e-22 109.0 97 56.7
Cpa.g.sc84.84 Carica papaya HOM05D002656 ORTHO05D003062 1.6e-21 106.3 97 52.6
Peaxi162Scf00062g00113 Petunia axillaris HOM05D002656 ORTHO05D003062 2.1e-21 105.9 109 50.5
Cfa009727 Carpinus fangiana HOM05D002656 ORTHO05D003062 1.4e-20 103.2 109 50.5
Dinv08041 Davidia involucrata HOM05D002656 ORTHO05D003062 1.4e-20 103.2 109 49.5
Nitab4.5_0001925g0060 Nicotiana tabacum HOM05D002656 ORTHO05D003062 2.3e-20 102.4 109 48.6
TAR633G1819 Trochodendron aralioides HOM05D002656 ORTHO05D003062 2.3e-20 102.4 109 47.7
Medtr4g065220 Medicago truncatula HOM05D002656 ORTHO05D003062 4.0e-20 101.7 99 51.5
QL01p005559 Quercus lobata HOM05D002656 ORTHO05D003062 4.0e-20 101.7 109 48.6
MSTRG.21401 Avicennia marina HOM05D002656 ORTHO05D003062 8.9e-20 100.5 109 48.6
Psat0s1239g0080 Pisum sativum HOM05D002656 ORTHO05D003062 8.9e-20 100.5 53 83.0
Rhsim13G0224400 Rhododendron simsii HOM05D002656 ORTHO05D003062 8.9e-20 100.5 110 50.0
PGSC0003DMG400023854 Solanum tuberosum HOM05D002656 ORTHO05D003062 8.9e-20 100.5 109 48.6
TAR369G0937 Trochodendron aralioides HOM05D002656 ORTHO05D003062 1.2e-19 100.1 109 47.7
Atru.chr3.2573 Acer truncatum HOM05D002656 ORTHO05D003062 1.5e-19 99.8 98 52.0
DCAR_029943 Daucus carota HOM05D002656 ORTHO05D003062 1.5e-19 99.8 109 46.8
Solyc12g100120.2 Solanum lycopersicum HOM05D002656 ORTHO05D003062 1.5e-19 99.8 109 48.6
Sopen12g034750 Solanum pennellii HOM05D002656 ORTHO05D003062 1.5e-19 99.8 109 48.6
Thecc.09G226900 Theobroma cacao HOM05D002656 ORTHO05D003062 1.5e-19 99.8 109 47.7
vmacro04181 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 1.5e-19 99.8 110 50.0
Haze_23080 Corylus avellana HOM05D002656 ORTHO05D003062 3.4e-19 98.6 109 48.6
Peaxi162Scf00075g00214 Petunia axillaris HOM05D002656 ORTHO05D003062 4.4e-19 98.2 97 49.5
Actinidia16305 Actinidia chinensis HOM05D002656 ORTHO05D003062 5.8e-19 97.8 110 50.0
CANSAT54G0212 Cannabis sativa HOM05D002656 ORTHO05D003062 5.8e-19 97.8 109 48.6
PSO384G2031 Papaver somniferum HOM05D002656 ORTHO05D003062 5.8e-19 97.8 109 46.8
CSS0020949 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 9.8e-19 97.1 109 47.7
CSS0048841 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 9.8e-19 97.1 109 47.7
MELO3C014613.2 Cucumis melo HOM05D002656 ORTHO05D003062 9.8e-19 97.1 109 45.0
Dinv36288 Davidia involucrata HOM05D002656 ORTHO05D003062 9.8e-19 97.1 110 49.1
Potri.001G018200 Populus trichocarpa HOM05D002656 ORTHO05D003062 9.8e-19 97.1 109 46.8
Sabra01G0012800 Salix brachista HOM05D002656 ORTHO05D003062 9.8e-19 97.1 109 46.8
CAN.G575.56 Capsicum annuum HOM05D002656 ORTHO05D003062 1.3e-18 96.7 109 47.7
CsaV3_4G024090 Cucumis sativus L. HOM05D002656 ORTHO05D003062 1.3e-18 96.7 109 45.0
Nitab4.5_0000175g0020 Nicotiana tabacum HOM05D002656 ORTHO05D003062 1.7e-18 96.3 109 47.7
Nn2g15392 Nelumbo nucifera HOM05D002656 ORTHO05D003062 2.2e-18 95.9 100 51.0
Nitab4.5_0002278g0030 Nicotiana tabacum HOM05D002656 ORTHO05D003062 4.9e-18 94.7 109 46.8
TWI32G0772 Tripterygium wilfordii HOM05D002656 ORTHO05D003062 4.9e-18 94.7 109 45.9
vmacro12714 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 6.4e-18 94.4 111 45.0
ClCG02G023420 Citrullus lanatus HOM05D002656 ORTHO05D003062 8.3e-18 94.0 109 45.0
Potri.003G206000 Populus trichocarpa HOM05D002656 ORTHO05D003062 8.3e-18 94.0 109 45.9
Sabra03G0152500 Salix brachista HOM05D002656 ORTHO05D003062 8.3e-18 94.0 109 45.9
CAN.G31.13 Capsicum annuum HOM05D002656 ORTHO05D003062 1.1e-17 93.6 109 45.9
MD03G1023400 Malus domestica HOM05D002656 ORTHO05D003062 1.1e-17 93.6 109 46.8
MD11G1028500 Malus domestica HOM05D002656 ORTHO05D003062 1.1e-17 93.6 109 47.7
Sabra03G0152200 Salix brachista HOM05D002656 ORTHO05D003062 1.1e-17 93.6 109 45.9
CSS0046914 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.4e-17 93.2 110 47.3
CSS0049476 Camellia sinensis var. sinensis HOM05D002656 ORTHO05D003062 1.4e-17 93.2 110 47.3
CAN.G575.55 Capsicum annuum HOM05D002656 ORTHO05D003062 1.4e-17 93.2 109 45.9
Sopen11g023540 Solanum pennellii HOM05D002656 ORTHO05D003062 1.4e-17 93.2 109 46.8
Solyc11g061700.2 Solanum lycopersicum HOM05D002656 ORTHO05D003062 1.9e-17 92.8 109 46.8
Cpa.g.sc84.86 Carica papaya HOM05D002656 ORTHO05D003062 2.4e-17 92.4 97 47.4
SalBow4G0144 Salvia bowleyana HOM05D002656 ORTHO05D003062 2.4e-17 92.4 98 48.0
PGSC0003DMG400015136 Solanum tuberosum HOM05D002656 ORTHO05D003062 2.4e-17 92.4 109 46.8
Eucgr.B03677 Eucalyptus grandis HOM05D002656 ORTHO05D003062 3.2e-17 92.0 109 44.0
Prupe.6G022600 Prunus persica HOM05D002656 ORTHO05D003062 3.2e-17 92.0 109 46.8
PGR102G1080 Punica granatum HOM05D002656 ORTHO05D003062 3.2e-17 92.0 109 46.8
SGA_v2.0_scaffold8G04617 Striga asiatica HOM05D002656 ORTHO05D003062 3.2e-17 92.0 107 48.6
Gohir.D07G129800 Gossypium hirsutum HOM05D002656 ORTHO05D003062 4.1e-17 91.7 110 45.5
Gorai.001G140300 Gossypium raimondii HOM05D002656 ORTHO05D003062 4.1e-17 91.7 110 45.5
EL10Ac4g10305 Beta vulgaris HOM05D002656 ORTHO05D003062 5.4e-17 91.3 111 46.8
CANSAT54G0447 Cannabis sativa HOM05D002656 ORTHO05D003062 5.4e-17 91.3 109 45.0
Rhsim01G0190200 Rhododendron simsii HOM05D002656 ORTHO05D003062 5.4e-17 91.3 111 45.0
Gohir.A07G125600 Gossypium hirsutum HOM05D002656 ORTHO05D003062 7.0e-17 90.9 110 45.5
RcHm_v2.0_Chr5g0077301 Rosa chinensis HOM05D002656 ORTHO05D003062 7.0e-17 90.9 98 49.0
Duzib150G0815 Durio zibethinus HOM05D002656 ORTHO05D003062 9.2e-17 90.5 86 50.0
FvH4_3g43250 Fragaria vesca HOM05D002656 ORTHO05D003062 9.2e-17 90.5 98 49.0
FAN11G2025 Fragaria x ananassa HOM05D002656 ORTHO05D003062 9.2e-17 90.5 98 49.0
FAN16G1961 Fragaria x ananassa HOM05D002656 ORTHO05D003062 9.2e-17 90.5 98 49.0
FAN21G1376 Fragaria x ananassa HOM05D002656 ORTHO05D003062 9.2e-17 90.5 98 49.0
FAN25G2888 Fragaria x ananassa HOM05D002656 ORTHO05D003062 9.2e-17 90.5 98 49.0
TWI60G1085 Tripterygium wilfordii HOM05D002656 ORTHO05D003062 9.2e-17 90.5 109 45.0
Cc01_g04690 Coffea canephora HOM05D002656 ORTHO05D003062 1.2e-16 90.1 101 48.5
Peaxi162Scf00839g00019 Petunia axillaris HOM05D002656 ORTHO05D003062 1.2e-16 90.1 109 46.8
Aa31LG3G14680 Aethionema arabicum HOM05D002656 ORTHO05D003062 2.1e-16 89.4 110 50.9
Manes.06G167200 Manihot esculenta HOM05D002656 ORTHO05D003062 2.1e-16 89.4 108 46.3
Thhalv10012662m.g Eutrema salsugineum HOM05D002656 ORTHO05D003062 2.7e-16 89.0 110 48.2
BolC3t13173H Brassica oleracea HOM05D002656 ORTHO05D003062 6.0e-16 87.8 87 51.7
A03p05730 Brassica napus HOM05D002656 ORTHO05D003062 1.0e-15 87.0 87 51.7
THA.LOC104811146 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 1.0e-15 87.0 111 46.8
Phvul.L010743 Phaseolus vulgaris HOM05D002656 ORTHO05D003062 1.3e-15 86.7 116 44.8
Sed0002857 Sechium edule HOM05D002656 ORTHO05D003062 1.3e-15 86.7 109 42.2
BcaB01g05388 Brassica carinata HOM05D002656 ORTHO05D003062 2.3e-15 85.9 87 51.7
C03p06680 Brassica napus HOM05D002656 ORTHO05D003062 2.3e-15 85.9 87 51.7
Carub.0006s1113 Capsella rubella HOM05D002656 ORTHO05D003062 2.3e-15 85.9 110 47.3
MBI01_g10238_MAGBIO Magnolia biondii HOM05D002656 ORTHO05D003062 3.0e-15 85.5 114 43.0
ECA238G1314 Erigeron canadensis HOM05D002656 ORTHO05D003062 3.9e-15 85.1 112 46.4
unitig_26.g10126 Utricularia gibba HOM05D002656 ORTHO05D003062 3.9e-15 85.1 117 41.0
CARHR200500 Cardamine hirsuta HOM05D002656 ORTHO05D003062 5.1e-15 84.7 110 46.4
THA.LOC104804973 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 8.6e-15 84.0 112 43.8
Aqoxy1G00248 Aquilegia oxysepala HOM05D002656 ORTHO05D003062 1.1e-14 83.6 112 39.3
Ah.07g199980 Amaranthus hybridus HOM05D002656 ORTHO05D003062 1.5e-14 83.2 102 45.1
EL10Ac5g12201 Beta vulgaris HOM05D002656 ORTHO05D003062 1.5e-14 83.2 104 42.3
BcaNung01184 Brassica carinata HOM05D002656 ORTHO05D003062 1.5e-14 83.2 96 49.0
A02p01610 Brassica napus HOM05D002656 ORTHO05D003062 1.5e-14 83.2 112 47.3
BraA02t05140Z Brassica rapa HOM05D002656 ORTHO05D003062 1.5e-14 83.2 112 47.3
CiPaw.14G121400 Carya illinoinensis HOM05D002656 ORTHO05D003062 1.5e-14 83.2 82 51.2
GSVIVG01025310001 Vitis vinifera HOM05D002656 ORTHO05D003062 1.5e-14 83.2 109 43.1
C02p05820 Brassica napus HOM05D002656 ORTHO05D003062 1.9e-14 82.8 112 47.3
BolC2t06527H Brassica oleracea HOM05D002656 ORTHO05D003062 1.9e-14 82.8 112 47.3
THA.LOC104799093 Tarenaya hassleriana HOM05D002656 ORTHO05D003062 1.9e-14 82.8 112 43.8
VMungo1080G0304 Vigna mungo HOM05D002656 ORTHO05D003062 2.5e-14 82.4 116 43.1
AT5G12950 Arabidopsis thaliana HOM05D002656 ORTHO05D003062 3.3e-14 82.0 110 46.4
Eucgr.B03672 Eucalyptus grandis HOM05D002656 ORTHO05D003062 3.3e-14 82.0 82 48.8
HanXRQChr10g0291081 Helianthus annuus HOM05D002656 ORTHO05D003062 5.6e-14 81.3 110 42.7
Oeu012936.1 Olea europaea HOM05D002656 ORTHO05D003062 5.6e-14 81.3 84 48.8
Sc09g0000530 Simmondsia chinensis HOM05D002656 ORTHO05D003062 5.6e-14 81.3 100 40.0
TAR362G0359 Trochodendron aralioides HOM05D002656 ORTHO05D003062 5.6e-14 81.3 98 44.9
Nn7g36189 Nelumbo nucifera HOM05D002656 ORTHO05D003062 7.3e-14 80.9 101 46.5
Oeu055806.1 Olea europaea HOM05D002656 ORTHO05D003062 7.3e-14 80.9 98 43.9
BraA03t09911Z Brassica rapa HOM05D002656 ORTHO05D003062 9.5e-14 80.5 99 46.5
AL6G23540 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 1.2e-13 80.1 110 45.5
Sp6g31010 Schrenkiella parvula HOM05D002656 ORTHO05D003062 1.2e-13 80.1 110 44.5
Glyma.15G033000 Glycine max HOM05D002656 ORTHO05D003062 1.6e-13 79.7 100 48.0
vmacro04182 Vaccinium macrocarpon HOM05D002656 ORTHO05D003062 2.1e-13 79.3 81 50.6
Ciclev10014230m.g Citrus clementina HOM05D002656 ORTHO05D003062 2.8e-13 79.0 116 44.8
RcHm_v2.0_Chr5g0077311 Rosa chinensis HOM05D002656 ORTHO05D003062 3.6e-13 78.6 99 47.5
AL6G23554 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 4.7e-13 78.2 96 47.9
Ciclev10017730m.g Citrus clementina HOM05D002656 ORTHO05D003062 4.7e-13 78.2 85 50.6
AL6G23050 Arabidopsis lyrata HOM05D002656 ORTHO05D003062 8.1e-13 77.4 96 46.9
Lsat_1_v5_gn_1_66380 Lactuca sativa HOM05D002656 ORTHO05D003062 8.1e-13 77.4 109 40.4
Oeu014067.1 Olea europaea HOM05D002656 ORTHO05D003062 1.1e-12 77.0 82 48.8
Sed0016959 Sechium edule HOM05D002656 ORTHO05D003062 1.8e-12 76.3 105 41.9
AT5G12960 Arabidopsis thaliana HOM05D002656 ORTHO05D003062 5.2e-12 74.7 96 46.9
MSTRG.21402 Avicennia marina HOM05D002656 ORTHO05D003062 5.2e-12 74.7 98 39.8
AUR62000090 Chenopodium quinoa HOM05D002656 ORTHO05D003062 6.8e-12 74.3 105 42.9
Ciclev10017637m.g Citrus clementina HOM05D002656 ORTHO05D003062 2.0e-11 72.8 83 47.0
Migut.D00571 Erythranthe guttata HOM05D002656 ORTHO05D003062 2.6e-11 72.4 106 40.6
AUR62019262 Chenopodium quinoa HOM05D002656 ORTHO05D003062 3.4e-11 72.0 103 41.7
HanXRQChr07g0197321 Helianthus annuus HOM05D002656 ORTHO05D003062 3.4e-11 72.0 119 39.5
ATR0605G155 Amborella trichopoda HOM05D002656 ORTHO05D003062 1.7e-10 69.7 118 37.3
Ah.04g161810 Amaranthus hybridus HOM05D002656 ORTHO05D003062 2.9e-10 68.9 99 39.4
SGA_v2.0_scaffold247G44839 Striga asiatica HOM05D002656 ORTHO05D003062 4.9e-10 68.2 99 41.4
QL01p005576 Quercus lobata HOM05D002656 ORTHO05D003062 1.4e-09 66.6 92 38.0
ATR0605G243 Amborella trichopoda HOM05D002656 ORTHO05D003062 5.4e-09 64.7 105 36.2
arahy.Tifrunner.gnm1.ann1.0VG9YA Arachis hypogaea HOM05D002656 ORTHO05D003062 1.2e-08 63.5 99 39.4
HanXRQChr13g0405961 Helianthus annuus HOM05D002656 ORTHO05D003062 7.8e-08 60.8 114 39.5
HanXRQChr13g0405981 Helianthus annuus HOM05D002656 ORTHO05D003062 7.8e-08 60.8 110 40.0
HanXRQChr13g0405991 Helianthus annuus HOM05D002656 ORTHO05D003062 7.8e-08 60.8 110 40.0
ECA248G1000 Erigeron canadensis HOM05D002656 ORTHO05D003062 1.7e-07 59.7 117 38.5
SEGI_07327 Sequoiadendron giganteum HOM05D002656 ORTHO05D003062 2.3e-07 59.3 119 31.1
SEGI_04967 Sequoiadendron giganteum HOM05D002656 ORTHO05D003062 3.9e-07 58.5 119 31.1
SEGI_17059 Sequoiadendron giganteum HOM05D002656 ORTHO05D003062 3.9e-07 58.5 119 31.1
QL01p005594 Quercus lobata HOM05D002656 ORTHO05D003062 2.5e-06 55.8 92 34.8
arahy.Tifrunner.gnm1.ann1.TTFN2L Arachis hypogaea HOM05D002656 ORTHO05D003062 3.3e-06 55.5 99 37.4
QL01p005612 Quercus lobata HOM05D002656 ORTHO05D003062 5.6e-06 54.7 92 34.8


User provided reference genes

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