Gene: AT5G12960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G12960
  • Transcript Identifier AT5G12960.1
  • Gene Type Coding gene
  • Location Chr5 : 4097788-4101518 : positive

Gene Family Information

  • ID HOM05D002656
  • #Genes/#Species 258/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G12960.1
  • uniprot Q84W43

Descriptions

  • Description proline-tRNA ligase (DUF1680)
  • Computational description FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1680 (InterPro:IPR012878), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: Putative glycosyl hydrolase of unknown function (DUF1680) (TAIR:AT5G12950.1); Has 1236 Blast hits to 1216 proteins in 340 species: Archae - 6; Bacteria - 1067; Metazoa - 2; Fungi - 28; Plants - 90; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046373
IEA
Gene OntologyL-arabinose metabolic process
GO:0046373
IEA
InterProL-arabinose metabolic process
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046556
IEA
Gene Ontologyalpha-L-arabinofuranosidase activity
GO:0046556
IEA
InterProalpha-L-arabinofuranosidase activity
GO:0016874
IEA
GOA Databaseligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT5G12950

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012878 Beta-L-arabinofuranosidase, GH127
IPR008928 Six-hairpin glycosidase superfamily
IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated