Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s427g0040 Pisum sativum HOM05D001129 ORTHO05D003814 9.0e-62 240.0 112 100.0
Psat0s4995g0040 Pisum sativum HOM05D001129 ORTHO05D003814 1.5e-40 169.5 85 91.8
Psat0s6682g0040 Pisum sativum HOM05D001129 ORTHO05D015438 5.7e-40 167.5 85 89.4
Psat0s6682g0080 Pisum sativum HOM05D001129 ORTHO05D321826 4.7e-34 147.9 76 90.8
Psat5g028240 Pisum sativum HOM05D001129 ORTHO05D326985 4.1e-30 134.8 67 94.0
Psat0s475g0040 Pisum sativum HOM05D001129 ORTHO05D321095 8.0e-26 120.6 57 96.5
Psat0s475g0120 Pisum sativum HOM05D001129 ORTHO05D320139 1.1e-22 110.2 58 87.9
Medtr5g095180 Medicago truncatula HOM05D001129 ORTHO05D003814 2.7e-18 95.5 101 48.5
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 7.0e-14 80.9 77 53.2
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.0e-13 79.3 77 51.9
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.3e-12 76.6 77 45.5
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.7e-12 76.3 102 40.2
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.7e-12 76.3 77 45.5
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 2.9e-12 75.5 77 49.4
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.8e-12 75.1 102 41.2
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 3.8e-12 75.1 82 45.1
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 5.0e-12 74.7 77 49.4
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 8.5e-12 73.9 82 46.3
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 8.5e-12 73.9 77 48.1
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 8.5e-12 73.9 102 42.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.5e-11 73.2 77 48.1
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.5e-11 73.2 77 45.5
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.9e-11 72.8 96 40.6
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.9e-11 72.8 77 48.1
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 3.2e-11 72.0 96 40.6
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 4.2e-11 71.6 77 46.8
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 5.5e-11 71.2 77 46.8
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 5.5e-11 71.2 77 48.1
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 7.2e-11 70.9 77 45.5
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 48.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 45.5
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 45.5
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 45.5
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 46.8
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 9.4e-11 70.5 77 45.5
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 1.2e-10 70.1 76 46.1
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.2e-10 70.1 96 40.6
TPR.G29243 Trifolium pratense HOM05D001129 ORTHO05D003814 1.2e-10 70.1 65 53.8
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.6e-10 69.7 77 46.8
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 1.6e-10 69.7 77 45.5
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 1.6e-10 69.7 77 45.5
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.6e-10 69.7 77 44.2
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 2.1e-10 69.3 77 44.2
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 2.1e-10 69.3 77 45.5
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.1e-10 69.3 76 47.4
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 2.7e-10 68.9 77 45.5
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 2.7e-10 68.9 77 45.5
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.7e-10 68.9 77 41.6
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 3.6e-10 68.6 77 44.2
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 3.6e-10 68.6 77 44.2
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 3.6e-10 68.6 77 44.2
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 3.6e-10 68.6 80 42.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 3.6e-10 68.6 77 42.9
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 3.6e-10 68.6 77 44.2
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 4.7e-10 68.2 77 45.5
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 4.7e-10 68.2 75 46.7
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 4.7e-10 68.2 77 44.2
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 44.7
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 6.1e-10 67.8 76 43.4
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 6.1e-10 67.8 77 45.5
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 6.1e-10 67.8 77 44.2
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 6.1e-10 67.8 77 46.8
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 6.1e-10 67.8 77 44.2
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 6.1e-10 67.8 77 44.2
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 8.0e-10 67.4 77 44.2
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 8.0e-10 67.4 77 42.9
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 8.0e-10 67.4 77 45.5
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.0e-09 67.0 101 37.6
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.0e-09 67.0 77 44.2
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.4e-09 66.6 77 44.2
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.4e-09 66.6 82 41.5
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 1.4e-09 66.6 76 43.4
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 1.8e-09 66.2 77 46.8
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 1.8e-09 66.2 77 41.6
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 1.8e-09 66.2 82 40.2
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-09 66.2 75 46.7
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-09 66.2 75 49.3
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.3e-09 65.9 77 44.2
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 2.3e-09 65.9 77 42.9
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 2.3e-09 65.9 77 44.2
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 3.0e-09 65.5 77 44.2
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 3.0e-09 65.5 77 44.2
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 3.0e-09 65.5 74 47.3
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 3.0e-09 65.5 77 44.2
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 4.0e-09 65.1 77 41.6
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 4.0e-09 65.1 76 43.4
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 4.0e-09 65.1 82 40.2
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 4.0e-09 65.1 77 42.9
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 4.0e-09 65.1 77 42.9
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 4.0e-09 65.1 76 42.1
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 4.0e-09 65.1 76 42.1
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.2e-09 64.7 76 42.1
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 5.2e-09 64.7 77 41.6
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 6.8e-09 64.3 75 44.0
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 6.8e-09 64.3 77 44.2
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 8.8e-09 63.9 74 41.9
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 8.8e-09 63.9 82 39.0
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 8.8e-09 63.9 74 43.2
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 1.2e-08 63.5 76 42.1
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 1.2e-08 63.5 76 42.1
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.2e-08 63.5 76 42.1
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 1.2e-08 63.5 77 42.9
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 1.2e-08 63.5 76 40.8
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 40.8
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 1.5e-08 63.2 76 42.1
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-08 62.8 76 42.1
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 2.0e-08 62.8 76 42.1
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 2.0e-08 62.8 76 42.1
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 4.4e-08 61.6 76 42.1
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 7.5e-08 60.8 76 38.2
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 9.8e-08 60.5 75 44.0
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.8e-08 60.5 75 42.7
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.8e-08 60.5 75 44.0
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.8e-08 60.5 75 44.0
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.2e-07 59.3 74 40.5
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 2.2e-07 59.3 75 41.3
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 6.3e-07 57.8 75 42.7
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 8.3e-07 57.4 69 39.1
AL4G40110 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 1.8e-06 56.2 112 31.2
AT2G41790 Arabidopsis thaliana HOM05D001129 ORTHO05D003157 1.8e-06 56.2 112 31.2
Gohir.D07G130166 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.8e-06 56.2 60 51.7
COL.COLO4_06002 Corchorus olitorius HOM05D001129 ORTHO05D015438 2.4e-06 55.8 45 53.3
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 2.4e-06 55.8 91 36.3
Carub.0004s0428 Capsella rubella HOM05D001129 ORTHO05D003157 3.1e-06 55.5 90 34.4
Carub.0004s2406 Capsella rubella HOM05D001129 ORTHO05D003157 3.1e-06 55.5 112 31.2
Carub.0005s2430 Capsella rubella HOM05D001129 ORTHO05D003157 3.1e-06 55.5 84 35.7
CAN.G3.33 Capsicum annuum HOM05D001129 ORTHO05D003814 3.1e-06 55.5 60 46.7
Gohir.D09G051901 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.1e-06 55.5 60 48.3
PRCOL_00003896 Prasinoderma coloniale HOM05D001129 ORTHO05D003814 3.1e-06 55.5 76 38.2
AL5G39040 Arabidopsis lyrata HOM05D001129 ORTHO05D003157 4.1e-06 55.1 84 35.7
AT3G57470 Arabidopsis thaliana HOM05D001129 ORTHO05D003157 4.1e-06 55.1 84 34.5
Gorai.001G201100 Gossypium raimondii HOM05D001129 ORTHO05D003814 4.1e-06 55.1 57 54.4
RcHm_v2.0_Chr3g0481841 Rosa chinensis HOM05D001129 ORTHO05D003157 4.1e-06 55.1 105 31.4
PGR004G1973 Punica granatum HOM05D001129 ORTHO05D003157 5.4e-06 54.7 81 34.6
THA.LOC104802114 Tarenaya hassleriana HOM05D001129 ORTHO05D003157 5.4e-06 54.7 84 33.3
BcaC02g12494 Brassica carinata HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 28.6
BcaNung02836 Brassica carinata HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 28.6
A05p02530 Brassica napus HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 28.6
BolC4t21939H Brassica oleracea HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 28.6
BraA05t19246Z Brassica rapa HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 28.6
Thhalv10016187m.g Eutrema salsugineum HOM05D001129 ORTHO05D003157 7.0e-06 54.3 112 29.5
PGR004G2267 Punica granatum HOM05D001129 ORTHO05D003157 7.0e-06 54.3 80 37.5
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 7.0e-06 54.3 59 45.8
CBR_g12082 Chara braunii HOM05D001129 ORTHO05D003157 9.1e-06 53.9 89 32.6
Ciclev10004240m.g Citrus clementina HOM05D001129 ORTHO05D003157 9.1e-06 53.9 87 34.5
Sp4g24050 Schrenkiella parvula HOM05D001129 ORTHO05D003157 9.1e-06 53.9 112 29.5
TAR636G3238 Trochodendron aralioides HOM05D001129 ORTHO05D003157 9.1e-06 53.9 77 35.1


User provided reference genes

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