Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.5e-283 978.8 472 100.0
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 2.0e-235 818.9 474 84.0
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 4.1e-233 811.2 474 82.9
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.7e-232 808.5 462 85.5
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 2.1e-229 798.9 474 81.6
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.2e-227 793.1 471 81.3
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 7.8e-224 780.4 474 80.0
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.7e-223 779.2 471 78.1
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 7.3e-222 773.9 474 77.2
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 1.6e-221 772.7 470 79.6
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 3.7e-218 761.5 474 77.8
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 6.0e-216 754.2 474 76.4
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.9e-214 749.2 479 76.2
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.1e-206 723.4 482 73.4
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 5.6e-206 721.1 448 77.2
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.1e-204 715.3 473 74.2
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.1e-201 706.8 468 73.1
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 8.4e-194 680.6 404 76.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 5.4e-193 677.9 447 70.9
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 9.3e-193 677.2 417 75.5
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 2.7e-192 675.6 465 67.7
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.7e-192 675.6 416 75.0
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 4.6e-192 674.9 401 75.6
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 7.9e-192 674.1 409 76.0
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 8.7e-191 670.6 451 69.6
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 8.7e-191 670.6 448 69.6
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 2.5e-190 669.1 413 74.6
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.3e-190 668.3 434 71.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.3e-189 666.8 403 76.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.6e-189 666.4 396 77.0
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 2.8e-189 665.6 403 75.9
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 3.7e-189 665.2 456 68.2
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 8.1e-189 664.1 399 75.7
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 1.1e-188 663.7 417 72.2
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 2.4e-188 662.5 397 75.1
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 3.1e-188 662.1 411 73.2
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 2.6e-187 659.1 428 72.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 5.8e-187 657.9 414 73.9
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 9.9e-187 657.1 412 72.6
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.8e-186 655.2 469 66.3
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 8.4e-186 654.1 426 70.0
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 4.2e-185 651.7 397 74.8
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 2.7e-184 649.0 419 72.1
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.8e-183 646.4 416 71.2
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 8.7e-183 644.0 427 70.0
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.5e-182 642.5 408 71.3
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 3.3e-182 642.1 402 72.1
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 3.3e-182 642.1 396 73.2
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.6e-182 641.3 432 69.7
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 7.4e-182 641.0 457 66.1
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 3.7e-181 638.6 419 70.2
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 4.8e-181 638.3 472 63.8
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.1e-180 637.1 460 66.5
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 1.1e-180 637.1 459 65.8
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 1.4e-180 636.7 417 70.3
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 3.1e-180 635.6 416 70.0
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 5.3e-180 634.8 416 70.0
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 6.9e-180 634.4 433 68.4
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 9.0e-180 634.0 416 70.0
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 3.4e-179 632.1 472 64.6
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 4.5e-179 631.7 470 64.7
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.9e-178 629.0 416 70.0
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 8.4e-178 627.5 471 64.5
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 4.2e-177 625.2 419 69.2
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.7e-176 622.5 421 69.1
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 6.0e-176 621.3 463 64.1
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 7.9e-176 620.9 421 68.9
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 7.9e-176 620.9 421 68.9
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 1.0e-175 620.5 420 68.6
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 5.1e-175 618.2 421 68.6
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.3e-174 615.1 405 68.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 7.4e-174 614.4 435 65.5
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.2e-173 612.8 478 61.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 4.8e-173 611.7 472 63.6
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 4.8e-173 611.7 430 67.4
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 6.3e-173 611.3 450 63.3
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 2.4e-172 609.4 420 68.6
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 3.1e-172 609.0 420 66.7
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.5e-171 606.7 436 65.6
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.7e-170 603.2 448 63.8
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.7e-170 603.2 405 67.9
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.2e-170 602.8 412 66.0
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 6.5e-170 601.3 415 67.2
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 8.5e-170 600.9 429 66.4
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.7e-168 595.9 400 66.0
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 2.7e-168 595.9 403 67.2
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.5e-166 589.3 393 69.7
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.7e-166 588.2 386 65.8
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 9.7e-166 587.4 382 69.6
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.5e-162 574.7 410 66.8
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.4e-161 573.5 408 61.8
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.9e-161 573.2 417 63.3
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.6e-160 568.9 459 58.2
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 6.1e-160 568.2 439 63.1
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 3.9e-159 565.5 349 72.8
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 6.7e-159 564.7 426 66.0
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 8.8e-159 564.3 354 73.4
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 6.3e-157 558.1 404 62.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 2.7e-152 542.7 356 69.4
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.6e-152 542.3 349 72.8
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 5.2e-151 538.5 402 65.2
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 5.5e-145 518.5 354 64.4
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 2.7e-144 516.2 397 60.2
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 6.7e-143 511.5 350 68.6
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.2e-142 510.8 342 70.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.7e-122 443.7 404 50.7
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 5.0e-122 442.2 392 56.9
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 5.2e-119 432.2 441 47.2
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.9e-117 426.4 415 48.4
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 6.0e-115 418.7 255 78.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 7.8e-115 418.3 409 50.4
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 3.3e-113 412.9 435 47.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 1.4e-111 407.5 259 74.1
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.5e-94 350.9 255 67.8
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 7.8e-83 312.0 243 57.2
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 9.6e-73 278.5 185 60.5
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 1.2e-67 261.5 160 70.0
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.9e-65 254.2 187 66.3
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.0e-61 241.9 285 46.0
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 3.8e-61 240.0 237 54.4
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 9.3e-60 235.3 160 66.9
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.6e-51 208.0 129 67.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.2e-45 187.6 128 62.5
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.4e-31 141.0 466 26.2
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 5.5e-28 129.8 85 70.6
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-25 121.7 378 27.8
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 6.5e-21 106.3 505 25.1
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 7.2e-20 102.8 473 24.3
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 4.2e-12 77.0 54 70.4
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 3.6e-11 73.9 80 56.2
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.4e-10 72.0 91 40.7
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 8.3e-08 62.8 164 30.5
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 8.3e-08 62.8 240 22.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 8.3e-08 62.8 55 50.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 3.2e-07 60.8 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 3.2e-07 60.8 61 52.5


User provided reference genes

Program Settings