Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.7e-76 288.1 145 100.0
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.1e-51 206.8 171 62.0
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 7.8e-50 200.7 167 63.5
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 2.3e-49 199.1 172 61.0
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 6.6e-49 197.6 168 63.7
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.1e-48 196.8 166 62.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.5e-45 186.4 169 59.8
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.1e-43 180.3 161 60.2
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.4e-43 179.1 172 56.4
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.7e-42 175.6 172 52.9
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 3.5e-42 175.3 163 58.9
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.3e-41 173.3 171 55.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.3e-41 173.3 167 54.5
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 2.3e-41 172.6 163 57.7
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 3.0e-41 172.2 166 57.2
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.9e-41 171.8 163 58.3
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.1e-41 171.4 171 55.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.1e-40 170.2 172 54.7
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.5e-40 169.9 171 54.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 4.3e-40 168.3 164 57.3
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 7.3e-40 167.5 163 54.0
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 9.6e-40 167.2 166 55.4
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 9.6e-40 167.2 164 54.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.3e-39 166.8 163 54.6
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.6e-39 166.4 167 56.3
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.6e-39 166.4 164 54.9
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.1e-39 166.0 136 64.7
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.8e-39 165.6 171 53.8
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.8e-39 165.6 171 53.8
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 4.8e-39 164.9 164 54.9
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 6.2e-39 164.5 167 54.5
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 8.1e-39 164.1 152 59.9
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.1e-38 163.7 172 51.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.4e-38 162.5 114 71.1
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 3.1e-38 162.2 167 52.1
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.2e-37 160.2 164 53.7
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.2e-37 160.2 164 55.5
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.5e-37 159.8 167 52.1
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.5e-37 159.8 164 54.9
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.5e-37 159.8 165 53.3
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 9.9e-37 157.1 166 51.8
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 9.9e-37 157.1 166 51.8
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.3e-36 156.8 207 44.0
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.7e-36 156.4 164 52.4
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.2e-36 156.0 166 52.4
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 4.9e-36 154.8 167 50.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-35 153.7 169 49.7
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-35 153.7 163 50.9
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.1e-35 153.7 114 66.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.1e-35 153.7 119 65.5
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 7.1e-35 151.0 164 50.0
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 7.1e-35 151.0 162 50.6
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 7.1e-35 151.0 118 62.7
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 9.3e-35 150.6 164 52.4
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.2e-34 150.2 173 49.7
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.2e-34 150.2 164 51.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 3.5e-34 148.7 155 53.5
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 3.5e-34 148.7 155 53.5
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 6.0e-34 147.9 185 47.6
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.8e-33 146.4 166 51.2
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 5.1e-33 144.8 164 51.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.5e-32 143.3 164 50.6
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.9e-32 142.9 155 50.3
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 7.4e-32 141.0 163 46.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 7.4e-32 141.0 167 46.1
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.1e-31 139.4 172 48.8
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 3.7e-31 138.7 155 49.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 3.7e-31 138.7 133 54.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-31 138.3 167 47.9
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 4.8e-31 138.3 115 57.4
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 6.2e-31 137.9 167 48.5
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.8e-30 136.3 123 56.1
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.1e-30 135.6 172 45.9
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.1e-30 135.6 172 45.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 4.0e-30 135.2 167 46.1
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 5.3e-30 134.8 115 61.7
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 9.0e-30 134.0 163 46.6
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 9.0e-30 134.0 163 46.6
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 9.0e-30 134.0 163 46.6
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.2e-29 133.7 163 46.6
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 3.4e-29 132.1 163 46.0
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.0
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.0
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 3.4e-29 132.1 114 57.9
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.4e-29 132.1 155 49.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 5.8e-29 131.3 163 46.0
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 9.9e-29 130.6 120 53.3
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.3e-28 130.2 163 46.6
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.3e-28 130.2 163 46.0
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.7e-28 129.8 123 53.7
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.2e-28 129.4 120 55.8
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.1e-27 127.1 118 55.9
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 2.7e-26 122.5 163 42.9
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 8.7e-25 117.5 102 55.9
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.1e-24 117.1 166 42.8
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.8e-23 112.5 124 50.0
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 5.3e-22 108.2 123 50.4
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.5e-21 106.7 117 47.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 5.8e-21 104.8 186 35.5
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 5.8e-21 104.8 186 35.5
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.9e-20 102.4 77 66.2
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.9e-17 92.0 125 40.0
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-14 81.3 117 40.2
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.5e-13 78.6 135 37.0
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 6.5e-12 74.7 111 46.8
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 6.5e-12 74.7 47 78.7
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-11 73.9 176 30.1
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-11 72.8 174 30.5
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-11 71.6 119 38.7
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 2.7e-10 69.3 71 60.6
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-10 68.9 122 37.7
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-09 67.4 126 31.0
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 3.9e-09 65.5 111 38.7
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-08 63.2 171 29.8
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 7.4e-08 61.2 111 37.8
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-08 60.8 111 34.2
TPR.G38998 Trifolium pratense HOM05D004737 ORTHO05D005623 1.3e-07 60.5 91 42.9
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-07 59.7 120 36.7
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 8.2e-07 57.8 165 27.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 2.4e-06 56.2 115 30.4
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 3.1e-06 55.8 125 28.8
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-06 55.1 117 28.2
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 9.1e-06 54.3 113 32.7
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 9.1e-06 54.3 115 28.7


User provided reference genes

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