Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.2e-151 538.9 268 100.0
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 9.1e-137 490.3 268 89.6
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.0e-136 489.2 268 88.4
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 4.0e-132 474.9 266 85.7
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.4e-131 471.5 267 85.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 9.2e-129 463.8 268 83.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 7.8e-128 460.7 283 79.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.3e-118 428.7 269 80.3
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.3e-118 428.3 269 78.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.6e-118 427.9 269 78.1
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.2e-117 424.5 272 75.7
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.4e-115 418.7 268 75.7
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.9e-114 415.6 266 74.8
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 8.3e-114 414.1 266 73.7
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.4e-113 412.5 268 75.7
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 3.2e-113 412.1 268 73.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 5.4e-113 411.4 268 73.1
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 7.0e-113 411.0 263 73.8
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 9.2e-113 410.6 263 73.8
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.5e-112 408.7 270 73.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.8e-112 407.5 268 73.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-111 406.8 269 72.5
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.3e-111 406.0 268 73.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.9e-111 405.2 265 74.0
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 5.1e-111 404.8 269 72.1
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.5e-110 403.3 269 72.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.3e-110 402.1 265 72.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 9.5e-110 400.6 266 72.2
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.2e-109 400.2 274 71.9
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.6e-109 399.8 269 72.5
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.8e-109 399.1 266 71.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.2e-109 397.9 266 70.3
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 8.1e-109 397.5 266 70.3
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 8.1e-109 397.5 266 72.2
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.2e-107 393.7 277 71.1
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.2e-107 393.7 266 72.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.4e-107 392.1 265 71.7
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.8e-107 391.3 266 69.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 7.5e-107 391.0 266 74.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.9e-107 390.6 266 70.3
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.9e-106 389.0 268 70.9
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 2.9e-106 389.0 272 71.7
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.7e-106 388.7 268 71.3
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.7e-106 388.7 266 69.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.9e-106 388.3 268 71.3
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.1e-105 387.1 235 76.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.9e-105 386.3 268 68.7
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.9e-105 386.3 266 70.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 2.4e-105 386.0 269 68.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.4e-105 386.0 268 70.1
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.2e-105 385.6 283 66.8
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 7.1e-105 384.4 268 67.9
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 9.2e-105 384.0 268 70.1
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-104 383.6 265 69.1
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-104 383.6 265 69.1
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.2e-104 383.6 266 69.2
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.1e-104 382.9 266 69.2
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 3.5e-104 382.1 265 69.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 6.0e-104 381.3 268 69.8
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 7.8e-104 380.9 265 68.3
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.8e-104 380.9 268 68.7
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.0e-103 380.6 264 68.6
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.0e-103 380.6 267 67.4
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-103 379.4 266 68.8
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 2.3e-103 379.4 266 69.2
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.9e-103 378.6 264 69.3
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.9e-103 378.6 268 68.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.1e-103 378.3 265 67.9
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 6.6e-103 377.9 266 67.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 6.6e-103 377.9 266 67.7
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 8.6e-103 377.5 266 67.7
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 8.6e-103 377.5 266 67.7
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 8.6e-103 377.5 266 67.3
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 8.6e-103 377.5 267 71.2
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.1e-102 377.1 266 67.7
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.9e-102 376.3 266 67.3
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.9e-102 376.3 266 68.8
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 3.3e-102 375.6 266 67.3
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.3e-102 375.2 266 67.7
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 4.3e-102 375.2 266 67.7
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 9.5e-102 374.0 266 70.3
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.6e-101 373.2 268 70.5
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.1e-101 372.9 266 66.2
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.1e-101 372.9 266 67.7
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 3.6e-101 372.1 265 66.8
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 3.6e-101 372.1 301 62.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-100 370.5 264 68.2
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.4e-100 370.2 269 66.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.2e-99 367.1 272 68.0
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 3.4e-99 365.5 270 65.9
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.7e-98 363.2 266 65.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.7e-98 363.2 266 63.5
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 3.8e-98 362.1 266 65.0
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.4e-98 361.3 266 65.4
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.1e-97 360.5 266 64.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.9e-97 359.8 247 72.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 7.1e-97 357.8 266 65.0
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 9.2e-97 357.5 182 95.6
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.2e-96 357.1 265 64.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.0e-95 354.0 211 76.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.9e-95 352.1 266 65.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 5.1e-95 351.7 266 65.4
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.1e-94 350.5 279 60.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.1e-94 350.5 326 56.1
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 9.6e-94 347.4 265 62.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 9.6e-94 347.4 267 64.0
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.6e-94 347.4 262 64.5
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.6e-93 346.7 265 61.5
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 4.7e-93 345.1 212 74.5
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-92 344.0 264 65.2
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 9.9e-91 337.4 270 63.0
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.1e-89 334.0 211 73.5
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.1e-89 334.0 195 80.0
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-89 334.0 213 71.4
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.4e-89 332.8 213 72.8
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.2e-88 330.5 197 80.2
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.1e-88 329.7 267 58.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.7e-88 329.3 245 66.5
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.3e-85 320.5 211 70.6
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.5e-83 313.5 191 77.5
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.8e-83 311.6 191 75.4
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 7.6e-83 311.2 249 62.2
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.9e-82 309.3 197 75.1
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 8.4e-82 307.8 282 52.8
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.9e-79 298.9 266 57.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.3e-78 295.8 231 59.3
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 9.0e-76 287.7 230 58.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 5.8e-75 285.0 204 66.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 5.8e-75 285.0 170 78.8
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 6.4e-74 281.6 320 50.3
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 9.3e-73 277.7 230 56.5
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.0e-71 272.7 371 46.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 5.1e-71 271.9 236 58.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 8.2e-69 264.6 232 53.9
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.0e-63 246.1 190 63.7
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.7e-62 241.9 275 52.7
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.9e-60 235.0 231 51.5
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 4.6e-56 222.2 155 67.1
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.1e-55 218.8 209 54.1
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.7e-54 215.3 179 56.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.5e-51 205.7 146 73.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.4e-49 200.7 178 55.6
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.4e-46 189.1 135 68.9
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 3.7e-45 186.0 146 61.0
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-43 179.5 138 65.9
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 7.7e-43 178.3 251 37.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-38 163.7 104 75.0
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.4e-36 157.5 298 33.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 5.3e-36 155.6 96 74.0
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 8.5e-34 148.3 173 50.3
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.2e-32 144.4 247 35.6
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.8e-31 138.7 107 61.7
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.7e-29 132.9 174 42.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 5.0e-26 122.5 108 55.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.5e-25 120.2 165 39.4
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 4.5e-19 99.4 55 85.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 4.5e-19 99.4 55 85.5
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-18 95.5 88 54.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.5e-17 93.6 84 57.1
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.6e-16 89.7 58 69.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 6.1e-16 89.0 55 70.9
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.3e-15 87.0 104 42.3
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.6e-08 64.3 47 63.8
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.1e-08 63.9 48 56.2
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.8e-07 60.8 36 77.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 4.0e-07 59.7 41 63.4
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 4.0e-07 59.7 41 63.4
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.0e-07 59.7 59 42.4


User provided reference genes

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