Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3176g0120 Pisum sativum HOM05D003220 ORTHO05D003944 8.1e-123 443.7 222 100.0
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 1.7e-43 180.3 316 44.3
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 2.9e-43 179.5 316 44.3
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 1.1e-42 177.6 302 45.0
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 2.4e-42 176.4 310 44.5
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 5.4e-42 175.3 316 43.7
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.6e-41 173.7 316 43.7
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 1.0e-40 171.0 224 52.2
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 1.3e-40 170.6 299 45.2
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.3e-40 170.6 316 43.0
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 1.7e-40 170.2 313 43.5
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 2.3e-40 169.9 309 42.7
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 2.3e-40 169.9 309 42.7
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 3.0e-40 169.5 309 42.7
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 3.9e-40 169.1 316 42.7
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 5.0e-40 168.7 316 42.1
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 5.0e-40 168.7 316 42.1
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 5.0e-40 168.7 311 42.8
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 6.6e-40 168.3 311 42.8
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 8.6e-40 167.9 315 41.6
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 8.6e-40 167.9 314 42.0
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 8.6e-40 167.9 314 42.0
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 8.6e-40 167.9 314 42.0
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 8.6e-40 167.9 315 41.6
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 8.6e-40 167.9 314 42.0
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 8.6e-40 167.9 316 42.4
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 8.6e-40 167.9 316 42.4
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.1e-39 167.5 318 42.5
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 1.1e-39 167.5 316 42.1
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 1.1e-39 167.5 316 42.1
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 1.1e-39 167.5 311 43.1
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 1.5e-39 167.2 311 42.4
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 1.9e-39 166.8 311 42.4
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 1.9e-39 166.8 316 42.7
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 2.5e-39 166.4 318 42.5
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 2.5e-39 166.4 316 42.4
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 2.5e-39 166.4 316 42.4
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 3.3e-39 166.0 318 41.5
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 3.3e-39 166.0 316 41.5
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 4.3e-39 165.6 316 41.1
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 4.3e-39 165.6 318 41.8
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 4.3e-39 165.6 316 41.1
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 4.3e-39 165.6 316 41.1
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 4.3e-39 165.6 316 41.1
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 5.6e-39 165.2 316 41.1
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 1.2e-38 164.1 311 42.4
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 2.1e-38 163.3 312 42.0
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.5
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.5
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.5
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.1
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.8
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 2.1e-38 163.3 316 41.5
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 2.8e-38 162.9 217 50.7
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 2.8e-38 162.9 316 40.8
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 2.8e-38 162.9 299 42.8
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 2.8e-38 162.9 316 40.8
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 3.6e-38 162.5 316 40.8
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 3.6e-38 162.5 311 41.5
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 4.7e-38 162.2 316 40.8
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 4.7e-38 162.2 297 42.8
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 4.7e-38 162.2 311 42.1
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 1.1e-37 161.0 321 40.2
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 1.4e-37 160.6 316 40.5
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 1.8e-37 160.2 307 41.7
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 1.8e-37 160.2 294 43.9
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 2.3e-37 159.8 280 43.9
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 2.3e-37 159.8 316 40.2
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 3.1e-37 159.5 308 40.9
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 3.1e-37 159.5 313 41.9
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 5.2e-37 158.7 224 49.6
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 6.8e-37 158.3 224 49.6
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 6.8e-37 158.3 312 40.7
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 6.8e-37 158.3 309 42.1
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 6.8e-37 158.3 307 41.0
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 8.9e-37 157.9 311 41.5
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 8.9e-37 157.9 316 40.2
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 1.2e-36 157.5 311 40.2
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.5e-36 157.1 316 40.5
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 1.5e-36 157.1 316 40.5
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 2.0e-36 156.8 288 42.4
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 2.0e-36 156.8 316 40.2
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 2.0e-36 156.8 314 40.4
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 2.6e-36 156.4 311 40.5
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 2.6e-36 156.4 306 41.8
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 2.6e-36 156.4 301 41.2
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 2.6e-36 156.4 315 40.3
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 3.4e-36 156.0 311 40.8
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 3.4e-36 156.0 312 40.7
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 4.4e-36 155.6 311 40.8
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 4.4e-36 155.6 316 40.2
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 7.5e-36 154.8 316 38.6
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 7.5e-36 154.8 309 40.1
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 7.5e-36 154.8 316 40.2
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 9.8e-36 154.5 316 38.6
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 9.8e-36 154.5 293 40.6
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.3e-35 154.1 316 40.2
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 1.3e-35 154.1 316 39.9
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 1.3e-35 154.1 314 40.4
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 1.7e-35 153.7 308 40.3
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.7e-35 153.7 308 40.3
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.7e-35 153.7 308 40.3
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 2.2e-35 153.3 224 47.8
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 2.9e-35 152.9 314 39.5
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.9e-35 152.1 313 39.3
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 4.9e-35 152.1 308 39.9
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 4.9e-35 152.1 313 39.9
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 6.4e-35 151.8 316 39.6
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.4e-35 151.8 308 39.9
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 8.3e-35 151.4 313 39.6
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 8.3e-35 151.4 316 39.6
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 1.1e-34 151.0 224 47.8
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 1.1e-34 151.0 313 39.6
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.4e-34 150.6 293 40.6
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.4e-34 150.6 313 39.9
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.9e-34 150.2 316 39.6
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.9e-34 150.2 315 38.1
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 2.4e-34 149.8 316 36.1
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 2.4e-34 149.8 315 38.1
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 3.2e-34 149.4 316 38.6
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 5.4e-34 148.7 293 40.3
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 7.1e-34 148.3 219 47.5
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 9.2e-34 147.9 313 39.3
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 9.2e-34 147.9 217 47.5
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 9.2e-34 147.9 210 48.6
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 1.2e-33 147.5 316 36.1
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.6e-33 147.1 313 39.0
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 1.6e-33 147.1 215 47.9
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 1.6e-33 147.1 216 48.1
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 2.7e-33 146.4 316 35.8
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 3.5e-33 146.0 316 38.3
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 3.5e-33 146.0 311 39.2
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 3.5e-33 146.0 318 35.5
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 3.5e-33 146.0 201 47.8
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 7.8e-33 144.8 316 37.7
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 1.3e-32 144.1 224 45.1
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 1.3e-32 144.1 318 38.4
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 1.7e-32 143.7 319 38.6
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 1.7e-32 143.7 311 39.9
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 2.3e-32 143.3 313 38.3
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 2.3e-32 143.3 316 35.4
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 3.0e-32 142.9 318 38.1
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 5.1e-32 142.1 224 45.1
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.6e-32 141.4 312 38.8
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 8.6e-32 141.4 315 37.8
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 1.5e-31 140.6 313 38.0
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 9.5e-31 137.9 315 35.2
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 1.2e-30 137.5 226 40.3
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 3.6e-30 136.0 312 36.2
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 6.2e-30 135.2 316 36.1
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 1.4e-29 134.0 224 43.8
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 2.3e-29 133.3 317 36.3
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 3.1e-29 132.9 322 35.7
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 1.2e-28 131.0 317 36.9
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 7.6e-28 128.3 312 35.9
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 1.4e-26 124.0 312 34.9
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 1.6e-25 120.6 325 33.5
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 7.8e-25 118.2 149 54.4
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 1.0e-24 117.9 221 41.2
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 2.3e-24 116.7 223 39.9
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 5.1e-24 115.5 211 42.2
Psat4g065240 Pisum sativum HOM05D003220 ORTHO05D003944 3.3e-23 112.8 131 55.0
FAN13G1952 Fragaria x ananassa HOM05D003220 ORTHO05D003944 8.1e-22 108.2 149 51.7
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 5.2e-21 105.5 163 46.0
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 4.6e-17 92.4 151 45.7
Os11g0303050 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 3.3e-15 86.3 128 46.9
Medtr3g088940 Medicago truncatula HOM05D003220 ORTHO05D003944 1.1e-13 81.3 106 48.1
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 4.0e-13 79.3 186 33.9
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 2.0e-12 77.0 206 33.5
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 1.3e-11 74.3 222 32.0
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 1.7e-11 73.9 200 33.0
Nn4g26515 Nelumbo nucifera HOM05D003220 ORTHO05D003944 2.9e-11 73.2 125 40.8
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 6.4e-11 72.0 265 31.3
vmacro19215 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 2.4e-10 70.1 58 69.0
BcaC07g38166 Brassica carinata HOM05D003220 ORTHO05D003944 2.7e-09 66.6 147 38.1
Cfa022737 Carpinus fangiana HOM05D003220 ORTHO05D003944 3.5e-09 66.2 175 31.4
Medtr3g088950 Medicago truncatula HOM05D003220 ORTHO05D000090 6.2e-06 55.5 32 68.8


User provided reference genes

Program Settings