Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 8.0e-269 929.9 477 100.0
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 4.8e-221 771.2 477 83.0
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 6.7e-199 697.6 484 76.2
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 4.4e-182 641.7 476 67.6
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 2.7e-179 632.5 480 65.4
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 5.2e-175 618.2 478 65.3
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.1e-172 610.5 478 64.9
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 2.2e-170 602.8 477 63.7
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.8e-167 593.2 477 65.6
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 2.3e-167 592.8 529 56.9
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 4.4e-150 535.4 473 56.7
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 7.5e-150 534.6 474 56.3
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.9e-148 530.0 476 54.0
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 1.0e-146 524.2 473 54.8
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 3.9e-146 522.3 479 54.9
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.9e-145 520.0 474 53.6
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 8.1e-144 514.6 474 54.2
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 8.9e-143 511.1 473 55.2
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 8.9e-143 511.1 475 52.6
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.3e-141 507.3 486 54.3
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 3.7e-141 505.8 475 53.7
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 4.9e-141 505.4 472 54.0
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 4.1e-140 502.3 472 53.0
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.3e-138 497.3 472 53.0
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.3e-138 497.3 473 52.4
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 5.1e-138 495.4 472 53.0
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-137 494.2 472 52.8
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.3e-137 492.3 502 50.2
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 9.5e-137 491.1 475 51.8
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 3.1e-135 486.1 477 52.6
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 5.2e-135 485.3 477 52.4
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 4.4e-134 482.3 478 51.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 5.8e-134 481.9 463 52.1
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 2.4e-132 476.5 478 47.9
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 7.8e-131 471.5 475 51.6
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 3.0e-130 469.5 480 49.8
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.5e-129 467.2 477 49.7
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 3.3e-129 466.1 487 49.9
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 8.1e-128 461.5 478 49.4
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.4e-127 460.7 446 53.1
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.4e-127 459.9 477 49.1
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.2e-126 457.6 480 51.5
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 1.2e-126 457.6 486 49.2
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 2.6e-126 456.4 481 49.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 7.6e-126 454.9 488 49.0
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 1.3e-125 454.1 482 49.8
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 1.3e-125 454.1 482 48.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 9.3e-124 448.0 481 49.5
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 9.3e-124 448.0 476 50.4
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 1.2e-123 447.6 472 51.3
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 2.7e-123 446.4 464 48.9
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 6.0e-123 445.3 476 46.8
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 7.8e-123 444.9 455 49.2
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 1.1e-121 441.0 478 48.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.8e-119 433.7 474 46.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.3e-119 432.2 483 47.6
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.6e-118 429.9 477 48.0
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 7.6e-118 428.3 522 45.8
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 9.9e-118 427.9 529 44.4
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 3.8e-117 426.0 390 52.8
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.1e-116 424.5 330 72.1
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 1.1e-116 424.5 480 47.3
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 1.9e-116 423.7 489 46.2
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 1.9e-116 423.7 526 45.1
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 7.9e-115 418.3 456 49.1
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.0e-114 416.4 522 43.9
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 5.6e-113 412.1 567 42.3
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 2.1e-112 410.2 477 45.9
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 2.8e-112 409.8 485 45.4
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.1e-111 406.4 512 43.6
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 2.0e-110 403.7 465 47.1
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 9.9e-110 401.4 481 45.3
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 6.4e-109 398.7 390 53.3
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.4e-108 397.5 387 52.5
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 3.5e-107 392.9 369 52.6
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 1.9e-105 387.1 479 42.6
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.5e-105 386.7 481 44.7
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 7.4e-105 385.2 371 53.1
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.0e-101 374.8 433 47.1
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 8.4e-101 371.7 468 44.4
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.1e-100 371.3 512 41.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.4e-100 370.9 458 44.5
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.5e-100 370.2 456 44.7
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.5e-97 360.1 510 41.6
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 9.6e-97 358.2 484 44.6
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 1.3e-90 337.8 460 40.0
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.4e-87 327.0 326 50.0
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.4e-84 317.8 338 47.0
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 7.9e-83 312.0 474 37.6
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 3.9e-82 309.7 316 50.3
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.4e-79 301.2 262 56.1
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 1.3e-77 294.7 463 35.4
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 3.6e-67 260.0 289 45.7
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 1.0e-66 258.5 274 46.7
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 8.8e-66 255.4 291 45.7
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 2.7e-62 243.8 289 45.7
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 6.1e-59 232.6 296 44.6
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 4.4e-57 226.5 411 34.5
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 3.5e-54 216.9 198 52.0
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.8e-53 213.4 168 58.3
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.6e-49 200.7 142 62.7
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 9.8e-49 198.7 225 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.8e-48 197.2 486 29.6
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 4.7e-43 179.9 188 48.4
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.4e-42 178.3 190 46.3
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 6.6e-37 159.5 186 46.8
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 1.3e-32 145.2 163 46.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-29 133.3 348 28.4
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.5e-28 131.7 131 49.6
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.4e-23 115.2 191 36.6
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.3e-20 104.0 89 53.9
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 3.3e-20 104.0 91 51.6
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 4.0e-18 97.1 288 32.6
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 9.9e-17 92.4 160 36.9
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 3.9e-13 80.5 53 64.2
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.5e-12 78.6 112 39.3
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.7e-08 65.1 96 37.5
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 9.3e-07 59.3 58 46.6


User provided reference genes

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